Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL89_RS05560 Genome accession   NZ_CP042374
Coordinates   1108056..1108604 (+) Length   182 a.a.
NCBI ID   WP_014974956.1    Uniprot ID   K0DED0
Organism   Leuconostoc carnosum strain CBA3620     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1103056..1113604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL89_RS05540 (FGL89_05540) - 1103463..1105157 (+) 1695 WP_014974960.1 ABC transporter ATP-binding protein -
  FGL89_RS05545 (FGL89_05545) - 1105212..1106036 (+) 825 WP_147000464.1 energy-coupling factor transporter transmembrane component T family protein -
  FGL89_RS05550 (FGL89_05550) - 1106091..1107539 (+) 1449 WP_014974958.1 Sapep family Mn(2+)-dependent dipeptidase -
  FGL89_RS05555 (FGL89_05555) rpsF 1107726..1108022 (+) 297 WP_014974957.1 30S ribosomal protein S6 -
  FGL89_RS05560 (FGL89_05560) ssb 1108056..1108604 (+) 549 WP_014974956.1 single-stranded DNA-binding protein Machinery gene
  FGL89_RS05565 (FGL89_05565) rpsR 1108641..1108925 (+) 285 WP_014974955.1 30S ribosomal protein S18 -
  FGL89_RS05570 (FGL89_05570) - 1109169..1111196 (+) 2028 WP_014974954.1 DHH family phosphoesterase -
  FGL89_RS05575 (FGL89_05575) rplI 1111248..1111700 (+) 453 WP_014974953.1 50S ribosomal protein L9 -
  FGL89_RS05580 (FGL89_05580) dnaB 1111702..1113168 (+) 1467 WP_014974952.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19751.36 Da        Isoelectric Point: 4.5280

>NTDB_id=331529 FGL89_RS05560 WP_014974956.1 1108056..1108604(+) (ssb) [Leuconostoc carnosum strain CBA3620]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQAGEREADFINAVIWRKAAENFSNFTGKGALVAVEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSTPSNNGGNFGAPSDNSFSGVDPFASANQNSNSQSTATTQND
APNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=331529 FGL89_RS05560 WP_014974956.1 1108056..1108604(+) (ssb) [Leuconostoc carnosum strain CBA3620]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGTGACGTGGAATTGCGCTATACGCAATCAGGTACAGCTGTTGG
GACATTTAGTCTCGCAGTTAACCGCCAATTTACTAACCAAGCTGGTGAGCGGGAAGCTGACTTTATTAACGCTGTTATCT
GGCGTAAAGCAGCTGAAAATTTCTCGAATTTTACTGGTAAAGGTGCTTTGGTAGCCGTTGAAGGCCGATTGCAAACAAGA
AATTATGAAAATAATCAAGGTCAACGTGTTTACGTTACCGAAGTTGTTGTAGATAATTTCTCATTGCTTGAATCACGCGC
TGAAAGTGAGAAACGTCGTTCACAAAACGGCTCATCAACACCATCTAACAATGGTGGCAACTTTGGTGCACCAAGTGATA
ATTCATTTAGTGGTGTTGATCCATTTGCAAGTGCGAACCAAAATTCAAACTCACAATCGACAGCAACGACACAAAATGAT
GCACCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DED0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.516

100

0.659
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.747

100

0.527