Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FGL89_RS02725 Genome accession   NZ_CP042374
Coordinates   575232..577043 (-) Length   603 a.a.
NCBI ID   WP_147000343.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain CBA3620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570232..582043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL89_RS02710 (FGL89_02710) - 571173..571676 (+) 504 WP_014973932.1 GNAT family N-acetyltransferase -
  FGL89_RS02715 (FGL89_02715) alsS 571765..573450 (-) 1686 WP_147000339.1 acetolactate synthase AlsS -
  FGL89_RS02720 (FGL89_02720) obgE 573724..575043 (-) 1320 WP_147000341.1 GTPase ObgE -
  FGL89_RS02725 (FGL89_02725) uvrC 575232..577043 (-) 1812 WP_147000343.1 excinuclease ABC subunit UvrC Machinery gene
  FGL89_RS02730 (FGL89_02730) - 577153..578772 (-) 1620 WP_147000344.1 CTP synthase -
  FGL89_RS02735 (FGL89_02735) rlmD 578968..580362 (-) 1395 WP_147000346.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  FGL89_RS02740 (FGL89_02740) - 580440..581429 (-) 990 WP_014973923.1 diacylglycerol kinase family lipid kinase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69262.60 Da        Isoelectric Point: 9.3517

>NTDB_id=331512 FGL89_RS02725 WP_147000343.1 575232..577043(-) (uvrC) [Leuconostoc carnosum strain CBA3620]
MLANPSKHIEQKLTLLPAEPGSYQMKDKNDKIIYVGKAKNLKNRVRSYFKQDHDGKTAELVQNIVDFDFIVTNSDKEAFL
LENELIKKYKPYYNIRLKYGTGYPYIKISKERDPKMSLVNEVKKDGGFYFGPYPNVYAAQETLRFLEKNYPLRRCNGYQG
RPCLYYNMGQCLGPCWREVSASDYQTQIERIKRFLDGDTATVKRSINEKMKIAAETLEFERAADLRDQLKYIDETVESQR
VLSKDTTPRDLFNYYLDKGWMTVEVFFLRQARLIRQFKRTFSVVGEAEEEVLSFIQQFYLQRNIQKPREVLVPKGIDTIA
LSEVLSVPVRTPIRGEKRDLLDLAGKNARIALEEKFRLMQLNEKKTTGAMAEITNALNLPLGHRIEAFDHSHTQGVEIVS
AMVVFDDGVPNKDLYRKYKIKSVDHADEWSETQEVIRRRYGRLLKEGGTMPDLILMDGGEIQLHAAKEVLEDELGMTNVP
IAAMVKNDKHKTADLIDGKTEQIVTLDKQSEGFFLVQRVQEEVHRFAINFHRQLRSKNSLASRLDTIDGVGPKTRQKLLR
EFGSLPKIAAASVKELEAIGINEKLARVIHMSLQTGSGLKAEI

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=331512 FGL89_RS02725 WP_147000343.1 575232..577043(-) (uvrC) [Leuconostoc carnosum strain CBA3620]
ATGTTAGCAAATCCCTCGAAACACATCGAACAAAAACTCACGTTACTGCCAGCAGAACCTGGGTCATATCAAATGAAGGA
TAAAAACGATAAAATTATTTATGTTGGTAAAGCTAAAAATCTAAAGAATCGTGTACGTTCTTACTTCAAGCAAGATCATG
ATGGCAAGACAGCCGAGCTAGTCCAAAATATTGTTGATTTTGATTTTATTGTTACTAATTCTGATAAAGAAGCTTTTTTG
TTAGAAAATGAGCTGATTAAAAAGTATAAGCCATATTACAATATTCGACTAAAATATGGTACAGGCTATCCTTATATTAA
AATTAGCAAAGAACGTGATCCAAAAATGTCGCTAGTCAATGAAGTGAAAAAAGATGGCGGCTTTTATTTTGGTCCGTATC
CAAACGTTTACGCTGCACAAGAAACCTTGCGTTTTTTAGAAAAAAATTATCCTTTACGTCGTTGTAATGGTTATCAAGGA
CGCCCTTGTTTATATTACAATATGGGCCAGTGTTTAGGACCATGTTGGCGCGAAGTGTCGGCCAGCGATTATCAAACACA
AATTGAGCGGATTAAGCGCTTTTTAGACGGGGATACTGCCACTGTTAAACGTTCAATAAATGAAAAAATGAAAATTGCTG
CAGAAACATTAGAATTTGAACGTGCTGCTGATTTGAGAGATCAATTGAAATATATTGATGAAACTGTTGAAAGTCAACGT
GTGTTGTCTAAAGATACAACGCCACGTGATTTATTCAATTATTATTTGGATAAAGGTTGGATGACTGTTGAAGTATTCTT
CTTACGTCAAGCTCGATTAATTCGCCAATTCAAGCGTACTTTTTCTGTTGTTGGCGAAGCTGAAGAAGAAGTCCTCAGCT
TTATCCAACAATTTTATTTACAGCGTAATATTCAAAAACCACGTGAGGTTCTCGTACCTAAAGGCATTGATACCATAGCA
TTATCCGAGGTGTTATCAGTACCTGTACGGACACCGATTAGAGGAGAAAAACGTGATTTATTAGATTTAGCAGGTAAGAA
TGCTAGAATTGCATTGGAAGAAAAATTTCGATTAATGCAATTAAACGAGAAAAAAACAACCGGCGCAATGGCTGAAATTA
CAAATGCTTTAAATCTACCATTGGGGCATCGCATTGAAGCATTTGATCATTCGCATACGCAAGGCGTTGAGATTGTTAGC
GCAATGGTTGTTTTCGATGATGGTGTACCGAATAAGGATTTATATCGAAAATATAAAATTAAGTCAGTTGATCATGCTGA
TGAATGGTCAGAAACACAAGAAGTTATCCGTCGACGTTATGGTCGCCTGCTTAAAGAGGGTGGCACGATGCCTGATTTGA
TTCTGATGGATGGTGGTGAGATACAATTACATGCTGCCAAAGAAGTACTAGAAGATGAATTAGGCATGACAAATGTGCCA
ATCGCAGCGATGGTTAAAAATGACAAACACAAGACGGCTGATTTAATTGATGGTAAAACTGAGCAAATTGTAACGTTAGA
TAAGCAATCAGAAGGTTTCTTTTTAGTTCAGCGTGTGCAAGAAGAAGTGCACCGATTTGCGATTAATTTTCATCGGCAAT
TGCGTAGTAAGAATTCACTGGCTTCACGTTTAGATACAATTGACGGTGTTGGACCAAAAACACGGCAAAAGCTATTACGT
GAATTTGGGTCATTACCAAAAATTGCAGCAGCGAGTGTGAAAGAATTAGAAGCCATTGGGATTAATGAAAAACTAGCACG
TGTGATCCATATGAGTTTACAAACCGGATCAGGACTCAAGGCTGAAATATAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(203-233)

GIY-YIG catalytic domain (GIY-YIG)

(21-94)

Helix-hairpin-helix domain (HHH_5)

(543-594)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(376-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

48.205

97.015

0.468
  uvrC Streptococcus pneumoniae R6

48.205

97.015

0.468
  uvrC Streptococcus pneumoniae D39

48.205

97.015

0.468