Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EJN90_RS00950 Genome accession   NZ_CP034465
Coordinates   192340..194130 (+) Length   596 a.a.
NCBI ID   WP_126108450.1    Uniprot ID   A0A3Q9BIU9
Organism   Jeotgalibaca ciconiae strain H21T32     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 187340..199130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN90_RS00925 (EJN90_00925) - 187460..187804 (+) 345 WP_126108445.1 PadR family transcriptional regulator -
  EJN90_RS00930 (EJN90_00930) - 187791..188630 (+) 840 WP_126108446.1 hypothetical protein -
  EJN90_RS00935 (EJN90_00935) - 188726..189400 (+) 675 WP_126108447.1 response regulator transcription factor -
  EJN90_RS00940 (EJN90_00940) - 189397..190452 (+) 1056 WP_126108448.1 HAMP domain-containing sensor histidine kinase -
  EJN90_RS00945 (EJN90_00945) rcrP 190583..192340 (+) 1758 WP_126108449.1 ABC transporter ATP-binding protein Regulator
  EJN90_RS00950 (EJN90_00950) rcrQ 192340..194130 (+) 1791 WP_126108450.1 ABC transporter ATP-binding protein Regulator
  EJN90_RS00955 (EJN90_00955) - 194210..195046 (+) 837 WP_126108451.1 MurR/RpiR family transcriptional regulator -
  EJN90_RS00960 (EJN90_00960) - 195274..196059 (-) 786 WP_126108452.1 PHP domain-containing protein -
  EJN90_RS00965 (EJN90_00965) - 196079..196900 (-) 822 WP_164543958.1 energy-coupling factor transporter transmembrane protein EcfT -
  EJN90_RS00970 (EJN90_00970) - 196890..198605 (-) 1716 WP_126108454.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65817.06 Da        Isoelectric Point: 5.9876

>NTDB_id=331502 EJN90_RS00950 WP_126108450.1 192340..194130(+) (rcrQ) [Jeotgalibaca ciconiae strain H21T32]
MAQNFRTNKKIPTKPTNFKDTWIKLLNYCRNYWVIIGAALLASAFGTILTLIGPDKLSELTDLITSGIATGIDMDAVTKI
GLTLVAFYGASTLLSLAQGIIMATITQRISNQLRDDISTKINRLPISFYDRIAKGDILSRVTNDVDTIAQSLNNSIGTLV
TAVTLLIGSLFIMIKTNLILTLTAIIATFIGFGLMMVIMKQSQKYFVRQQADLGDINGHIEEIYSGHTIVKAYNGETREK
ATFDRINQSLQDSGFKAQSLSGLMMPLMSFIGNFGYVAVCIVGAMLAINGSISFGVIVAFIMYVRYFTQPLSQIAQAAQS
LQSTAAASERVFQMLEAKEMEDESYKTAGLEKARGFVEFNHVQFGYEGTEKTIIHDFSAQAKPGQKIAIVGPTGAGKTTI
INLLMRFHEINSGEIKIDGISTQELTRQDVHNQFCMVLQDTWIFEGTIRENLIYSMDHVSDDKIIEACKAVGIHHFIATM
PKGYETVLNDQVTLSEGQKQQITIARAMIADRPMLILDEATSSVDTRTELKIQEAMDQLMVGRTSFIIAHRLSTIKNADL
ILVMKDGDIIESGTHDELLIKGSFYADLYNSQFEAA

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=331502 EJN90_RS00950 WP_126108450.1 192340..194130(+) (rcrQ) [Jeotgalibaca ciconiae strain H21T32]
ATGGCTCAAAACTTTCGTACAAATAAAAAAATACCTACAAAACCAACAAACTTTAAAGACACTTGGATAAAGTTACTGAA
CTATTGCCGGAACTATTGGGTCATTATTGGTGCAGCCCTTCTTGCTTCAGCATTCGGAACCATTCTAACTTTAATTGGAC
CCGATAAACTATCTGAGTTAACCGATTTGATTACATCAGGTATCGCCACTGGAATTGATATGGATGCTGTGACGAAAATT
GGCTTAACCTTGGTGGCTTTCTACGGAGCAAGCACACTACTTTCCCTTGCCCAAGGGATTATTATGGCGACCATTACGCA
AAGAATCTCCAATCAGTTGCGTGATGATATCTCCACAAAAATTAATCGGTTACCAATCTCGTTTTATGACCGGATTGCAA
AAGGTGATATTTTATCTCGTGTTACAAATGATGTCGATACCATTGCACAATCGCTCAATAATAGTATTGGTACATTGGTG
ACCGCTGTTACCCTATTGATCGGTTCCTTATTTATAATGATAAAAACAAACTTGATTCTGACCCTTACTGCTATCATAGC
CACTTTCATTGGATTTGGACTAATGATGGTCATTATGAAACAATCACAAAAATACTTTGTCCGCCAGCAAGCTGACTTAG
GTGATATTAATGGTCATATTGAAGAAATTTATTCTGGTCATACAATTGTTAAAGCATATAATGGTGAAACTCGAGAAAAA
GCAACGTTCGATCGAATCAATCAAAGTCTGCAAGACAGCGGGTTTAAAGCTCAAAGTCTATCTGGTCTTATGATGCCGCT
AATGTCTTTTATTGGAAACTTTGGTTATGTAGCTGTCTGTATCGTAGGTGCTATGCTAGCAATCAATGGCTCCATTTCCT
TTGGAGTAATTGTTGCTTTTATCATGTATGTTCGCTATTTTACCCAACCATTAAGCCAAATCGCACAAGCTGCCCAATCT
TTACAGTCCACTGCAGCAGCGAGTGAGCGGGTCTTCCAAATGTTGGAAGCAAAAGAGATGGAAGACGAAAGTTATAAAAC
AGCTGGCTTAGAAAAAGCACGTGGTTTTGTAGAATTTAACCATGTTCAGTTCGGTTATGAAGGTACTGAGAAAACAATTA
TTCATGACTTCTCTGCCCAAGCAAAACCCGGACAAAAAATTGCCATCGTTGGACCTACTGGAGCTGGTAAGACGACCATC
ATTAATCTGTTAATGAGATTTCATGAGATCAACAGCGGTGAAATAAAAATTGATGGTATTTCTACACAAGAATTAACACG
TCAAGATGTCCACAACCAATTTTGTATGGTATTACAAGACACCTGGATTTTTGAAGGTACCATTCGTGAAAATCTTATTT
ATTCAATGGATCATGTGTCAGACGATAAAATAATCGAAGCATGTAAGGCAGTCGGCATTCACCATTTTATCGCCACCATG
CCAAAAGGATATGAGACAGTTCTAAATGACCAAGTCACACTTTCAGAAGGGCAAAAACAACAAATTACGATTGCCCGTGC
AATGATAGCAGACAGACCTATGTTGATTCTCGATGAAGCAACCAGTTCAGTTGATACACGTACTGAGTTGAAAATACAAG
AAGCTATGGATCAACTGATGGTTGGCCGTACTTCTTTTATTATCGCCCATCGTCTATCTACCATTAAAAATGCTGATTTG
ATTTTAGTCATGAAAGACGGCGATATCATCGAAAGCGGCACGCATGATGAATTACTTATTAAAGGTTCCTTCTATGCAGA
TTTGTATAATAGTCAGTTTGAAGCTGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-311)

ABC transporter (ABC_tran)

(375-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9BIU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.951

94.966

0.55

Multiple sequence alignment