Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EJN90_RS00945 Genome accession   NZ_CP034465
Coordinates   190583..192340 (+) Length   585 a.a.
NCBI ID   WP_126108449.1    Uniprot ID   A0A3S9H7M6
Organism   Jeotgalibaca ciconiae strain H21T32     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 185583..197340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN90_RS00910 (EJN90_00910) - 185775..186344 (+) 570 WP_126108442.1 DUF1697 domain-containing protein -
  EJN90_RS00915 (EJN90_00915) - 186389..186754 (+) 366 WP_126108443.1 thioesterase family protein -
  EJN90_RS00920 (EJN90_00920) - 186825..187106 (+) 282 WP_126108444.1 hypothetical protein -
  EJN90_RS00925 (EJN90_00925) - 187460..187804 (+) 345 WP_126108445.1 PadR family transcriptional regulator -
  EJN90_RS00930 (EJN90_00930) - 187791..188630 (+) 840 WP_126108446.1 hypothetical protein -
  EJN90_RS00935 (EJN90_00935) - 188726..189400 (+) 675 WP_126108447.1 response regulator transcription factor -
  EJN90_RS00940 (EJN90_00940) - 189397..190452 (+) 1056 WP_126108448.1 HAMP domain-containing sensor histidine kinase -
  EJN90_RS00945 (EJN90_00945) rcrP 190583..192340 (+) 1758 WP_126108449.1 ABC transporter ATP-binding protein Regulator
  EJN90_RS00950 (EJN90_00950) rcrQ 192340..194130 (+) 1791 WP_126108450.1 ABC transporter ATP-binding protein Regulator
  EJN90_RS00955 (EJN90_00955) - 194210..195046 (+) 837 WP_126108451.1 MurR/RpiR family transcriptional regulator -
  EJN90_RS00960 (EJN90_00960) - 195274..196059 (-) 786 WP_126108452.1 PHP domain-containing protein -
  EJN90_RS00965 (EJN90_00965) - 196079..196900 (-) 822 WP_164543958.1 energy-coupling factor transporter transmembrane protein EcfT -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64612.03 Da        Isoelectric Point: 5.2724

>NTDB_id=331501 EJN90_RS00945 WP_126108449.1 190583..192340(+) (rcrP) [Jeotgalibaca ciconiae strain H21T32]
MVRIFKNLTKKEVLLGAISLIFIVMQVWLDLKLPDYMSEITMLVQTETGNMSDILSAGGMMLLCALGSLISSVVVAVLAS
KISANFGANLREKLFDKVQSFSLEEISRFSTASLITRSTNDITQVQTLIVMGLQVMIKAPILAVWAIIKISGKSWQWTFS
TGVAVAYLLIIVSICMVLALPKFKKLQVLNDKMNNVTRENLTGLSVVRAYNAEDYQENKFDVVNTELTNTHLFTSRIMAF
LMPNIQLVMSGLSLSIYWIGAILIQNADMMNKMTLFSDMVVFSSYAMQVVMAFMMLIIIFIMVPRASVSAKRILEVLETE
PTIVDGTINEPQTSAIGNVEFKNVSFKYPDAEEYVIRNVSFSADKGETVAFIGSTGSGKSTLVNLIPRFYEASEGEILVN
GINVKDYTQYALHNKIGYVAQKATLFSGTVKSNVAYGENGKAGFLDTDIVEAVYTAQAADFVENLEDGYNGYISQGGSNL
SGGQKQRLSIARAIARRPEVFIFDDSFSALDYKTDRKLREALQKDCADATKLIVAQRIGTIKDADRIVVLDNGKVVGIGT
HDELMNSCEVYREIAYSQLSKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=331501 EJN90_RS00945 WP_126108449.1 190583..192340(+) (rcrP) [Jeotgalibaca ciconiae strain H21T32]
ATGGTAAGAATTTTTAAGAATTTAACAAAAAAAGAAGTCCTCTTGGGTGCGATTAGCTTAATTTTTATCGTTATGCAAGT
TTGGCTTGATTTAAAATTACCTGATTACATGAGCGAAATAACGATGCTCGTTCAAACGGAGACAGGTAATATGAGTGATA
TTTTATCTGCAGGCGGAATGATGTTGTTATGTGCGCTTGGAAGCTTGATTTCTTCTGTAGTCGTTGCTGTTTTAGCATCC
AAAATATCTGCAAATTTTGGAGCTAATTTACGTGAGAAGCTTTTTGATAAGGTTCAATCTTTCTCGTTAGAAGAAATCAG
CAGATTCTCAACGGCTAGCTTGATTACACGCTCAACAAATGACATTACACAAGTACAGACTTTGATTGTTATGGGATTGC
AAGTCATGATAAAAGCTCCTATCCTCGCTGTTTGGGCAATCATAAAAATTTCAGGAAAAAGTTGGCAATGGACATTTTCT
ACTGGTGTCGCTGTAGCTTATTTATTAATCATTGTCAGCATTTGTATGGTTCTCGCTTTACCTAAATTTAAGAAGCTGCA
AGTATTAAACGATAAAATGAATAACGTTACTCGCGAGAACCTGACGGGTCTATCAGTCGTTCGAGCATACAATGCGGAAG
ATTATCAAGAAAATAAATTCGACGTTGTTAATACTGAATTAACAAATACCCATTTATTTACAAGCCGTATTATGGCGTTC
TTGATGCCAAATATCCAACTTGTAATGAGTGGACTATCCCTTTCTATTTATTGGATTGGAGCAATTTTAATTCAAAACGC
AGATATGATGAATAAAATGACACTGTTTTCTGATATGGTTGTCTTCTCTTCTTATGCTATGCAAGTAGTGATGGCTTTCA
TGATGTTAATTATTATTTTTATAATGGTACCGCGCGCTTCTGTTTCGGCTAAAAGGATTTTAGAAGTCCTTGAAACGGAG
CCAACTATTGTCGATGGGACAATTAATGAACCTCAAACATCAGCTATCGGAAATGTTGAATTTAAAAATGTGAGTTTCAA
ATATCCAGATGCGGAAGAATATGTCATTCGTAATGTTTCTTTCTCAGCTGATAAAGGTGAGACGGTTGCTTTTATTGGTT
CAACTGGTTCTGGTAAAAGCACGCTCGTTAATTTAATTCCGCGTTTTTATGAAGCTTCAGAAGGTGAAATTCTTGTGAAT
GGCATTAATGTAAAGGATTATACGCAATATGCCCTTCATAATAAAATTGGTTATGTCGCTCAAAAAGCAACGCTATTTAG
TGGTACAGTAAAATCAAATGTTGCATATGGTGAAAATGGTAAAGCTGGCTTCTTAGACACAGACATTGTAGAAGCAGTCT
ATACCGCTCAAGCTGCTGATTTTGTTGAAAACTTAGAAGACGGATATAATGGATATATTTCTCAAGGTGGTTCTAACTTA
TCCGGGGGACAAAAACAACGCTTGTCTATTGCACGTGCCATTGCTCGTCGACCTGAAGTGTTCATTTTTGATGATTCATT
TTCAGCACTTGATTATAAAACGGATCGAAAACTTCGAGAAGCACTTCAAAAAGATTGTGCAGATGCGACAAAATTAATCG
TTGCTCAACGAATCGGTACGATTAAAGATGCTGATCGAATTGTCGTTCTTGATAACGGCAAAGTTGTAGGAATTGGCACC
CATGATGAATTGATGAATTCTTGTGAAGTTTACCGAGAAATTGCTTACTCACAACTTTCAAAGGAGGAACTTGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9H7M6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.523

100

0.545

Multiple sequence alignment