Detailed information NTG0331489

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EJN92_RS13120
• Genome accession: NZ_CP034464
• Coordinates: 3000306..3001811 (+)
• Length: 501 a.a.
• NCBI ID: WP_227869533.1
• Uniprot ID: -
• Organism: Undibacterium parvum strain DSM 23061
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2995306..3006811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJN92_RS13105 (EJN92_13105)	-	2997473..2998282 (+)	810	WP_126128240.1	inner membrane protein YpjD	-
EJN92_RS13110 (EJN92_13110)	-	2998279..2998539 (+)	261	WP_126128241.1	PP0621 family protein	-
EJN92_RS13115 (EJN92_13115)	-	2998551..3000299 (+)	1749	WP_126128242.1	nitrogen regulation protein NR(II)	-
EJN92_RS13120 (EJN92_13120)	pilR	3000306..3001811 (+)	1506	WP_227869533.1	sigma-54 dependent transcriptional regulator	Regulator
EJN92_RS13125 (EJN92_13125)	ampD	3001801..3002379 (+)	579	WP_126129914.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
EJN92_RS13130 (EJN92_13130)	-	3002711..3003127 (+)	417	WP_227869534.1	rhodanese-like domain-containing protein	-
EJN92_RS13135 (EJN92_13135)	-	3003295..3006114 (-)	2820	WP_126128243.1	pitrilysin family protein	-

Sequence

Protein

• Length: 501 a.a.
• Molecular weight: 54509.44 Da
• Isoelectric Point: 4.8335

>NTDB_id=331489 EJN92_RS13120 WP_227869533.1 3000306..3001811(+) (pilR) [Undibacterium parvum strain DSM 23061]
MSTTEISSQMRVLVVDDEAHLRELLEITLIKMGLDVDSAESLAVARSYLAKTSYALVLTDMRLPDGSGMELVEEVGSLYK
NTPIAVITAFGSADNAVVALKAGAFDYVSKPVALDQLRKLVRSALQMNQVPVAISKEAQAPDALSPSCLIGQSAAMQDVR
SQIARLARSMAPVIITGESGSGKELAAREIHANSVRLGKAFIAVNCGAIPEALMEAEFFGYRKGAFTGASDDRDGFFQAA
SGGTLMLDEVADLPLAMQVKLLRAIQERRVRKVGATVEEPVDVRIISATHQNLEACVSAGKFRQDLYYRLNVIELHLPPL
RERLGDIAVLSDAILQRLGSTEYPVSLQASALQALSEYDFPGNVRELENILERAVAFANDGSIEVTDLALRNNGRNSGSS
KTARLNETAKLEASEVADFTQILAQPPPLMADLVALEEENLFSAPELPCCLPEYLEKIERELIRRALLKTHDNRTQAAEL
LGVSFRQLRYQIQKLKINDAG

Nucleotide

• Length: 1506 bp

>NTDB_id=331489 EJN92_RS13120 WP_227869533.1 3000306..3001811(+) (pilR) [Undibacterium parvum strain DSM 23061]
ATGAGTACTACCGAAATCTCAAGCCAGATGCGCGTTTTAGTCGTGGACGACGAAGCGCATTTGCGTGAATTATTAGAAAT
CACCCTGATCAAAATGGGCTTGGACGTCGACAGTGCCGAGTCCTTGGCGGTGGCGCGTAGCTATTTGGCGAAGACCAGCT
ACGCCCTGGTATTGACCGATATGCGTTTGCCGGATGGCTCCGGTATGGAGTTGGTAGAAGAAGTCGGTAGCCTGTATAAA
AACACGCCTATCGCCGTGATTACCGCCTTCGGCAGTGCCGACAATGCGGTGGTGGCGCTTAAAGCTGGTGCTTTTGATTA
TGTCTCCAAGCCCGTCGCCTTAGACCAATTGCGTAAATTAGTCCGCTCCGCGCTGCAGATGAATCAGGTGCCAGTCGCAA
TTTCTAAAGAAGCGCAAGCCCCTGATGCACTGAGCCCGTCTTGCCTGATAGGGCAGTCGGCAGCCATGCAGGATGTGCGC
TCCCAGATCGCGCGTTTGGCGCGCAGCATGGCGCCGGTGATCATTACCGGCGAATCCGGTAGCGGTAAAGAATTGGCGGC
GCGTGAGATTCATGCCAATAGCGTACGTCTGGGCAAGGCGTTTATCGCAGTCAATTGCGGCGCGATCCCCGAGGCCTTGA
TGGAGGCCGAATTTTTTGGTTATCGTAAAGGTGCTTTCACCGGGGCGAGCGACGATAGAGATGGTTTTTTTCAGGCGGCC
AGTGGCGGTACTTTAATGCTCGATGAAGTCGCTGATTTGCCCTTGGCGATGCAAGTGAAGTTACTGCGCGCGATACAAGA
GCGGCGCGTACGCAAAGTGGGCGCGACCGTCGAAGAGCCGGTCGATGTGCGCATCATTAGCGCCACCCATCAAAATCTGG
AAGCCTGCGTCAGCGCCGGTAAATTCCGCCAGGATTTGTATTACCGCTTAAACGTCATCGAATTGCATCTGCCACCTCTG
CGTGAACGCTTGGGGGATATCGCGGTATTGTCCGATGCGATACTGCAGCGTTTAGGCAGTACCGAGTATCCGGTCAGTTT
GCAAGCCTCGGCCTTACAAGCTTTGAGTGAATACGATTTTCCCGGCAATGTGCGTGAACTAGAGAATATCCTTGAGCGCG
CGGTGGCCTTCGCCAACGATGGCAGTATAGAAGTGACTGATCTGGCCTTACGCAATAATGGCCGCAATAGTGGCAGCAGT
AAAACCGCCCGGCTCAACGAGACTGCGAAGCTTGAGGCTAGCGAAGTAGCAGATTTCACCCAGATATTGGCGCAGCCTCC
ACCTTTGATGGCGGACCTGGTCGCGCTTGAAGAAGAGAATCTATTTTCGGCACCGGAACTGCCTTGTTGTCTGCCTGAGT
ATCTAGAGAAAATAGAGCGCGAACTGATACGCCGCGCTTTGCTCAAAACCCATGACAACCGCACTCAGGCGGCCGAGTTG
CTGGGGGTGAGTTTCCGTCAATTGCGTTATCAAATTCAAAAATTGAAAATCAATGATGCTGGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (12-121)

• Bacterial regulatory protein, Fis family (HTH_8) (455-495)

• Sigma-54 interaction domain (Sigma54_activat) (149-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50.507	98.403	0.497
pilR	Acinetobacter baumannii strain A118	43.522	98.603	0.429