Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FS836_RS13640 Genome accession   NZ_CP042352
Coordinates   2753037..2753774 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RM9513     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2748037..2758774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS836_RS13625 (FS836_13705) clpC 2748491..2751064 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FS836_RS13630 (FS836_13710) yfiH 2751194..2751925 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  FS836_RS13635 (FS836_13715) rluD 2751922..2752902 (-) 981 WP_112891039.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FS836_RS13640 (FS836_13720) comL 2753037..2753774 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FS836_RS13645 (FS836_13725) raiA 2754045..2754386 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FS836_RS13650 (FS836_13730) pheL 2754490..2754537 (+) 48 WP_010723158.1 phe operon leader peptide -
  FS836_RS13655 (FS836_13735) pheA 2754636..2755796 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  FS836_RS13660 (FS836_13740) tyrA 2755839..2756960 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FS836_RS13665 (FS836_13745) aroF 2756971..2758041 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FS836_RS13670 (FS836_13750) yfiL 2758251..2758616 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=331446 FS836_RS13640 WP_000197686.1 2753037..2753774(+) (comL) [Escherichia coli strain RM9513]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=331446 FS836_RS13640 WP_000197686.1 2753037..2753774(+) (comL) [Escherichia coli strain RM9513]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment