Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EJF26_RS00825 Genome accession   NZ_CP034442
Coordinates   152943..154175 (+) Length   410 a.a.
NCBI ID   WP_004240351.1    Uniprot ID   A0A1X1FYB6
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 147943..159175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS00790 galE 148622..149641 (+) 1020 WP_001156515.1 UDP-glucose 4-epimerase GalE -
  EJF26_RS00795 - 149643..150590 (+) 948 WP_004246373.1 glycosyltransferase family 2 protein -
  EJF26_RS00800 - 150689..150892 (-) 204 WP_004246691.1 ferredoxin -
  EJF26_RS00805 - 150938..151432 (+) 495 WP_000410184.1 SAG1386/EF1546 family surface-associated protein -
  EJF26_RS00810 cmk 151442..152116 (+) 675 WP_000849393.1 (d)CMP kinase -
  EJF26_RS00815 - 152235..152741 (+) 507 WP_000162311.1 dihydrofolate reductase -
  EJF26_RS00825 clpX 152943..154175 (+) 1233 WP_004240351.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EJF26_RS00830 yihA 154184..154771 (+) 588 WP_000405203.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EJF26_RS00835 - 154781..155161 (+) 381 WP_000598015.1 RidA family protein -
  EJF26_RS00840 rapZ 155213..156103 (+) 891 WP_000163027.1 RNase adapter RapZ -
  EJF26_RS00845 - 156100..157077 (+) 978 WP_001231057.1 YvcK family protein -
  EJF26_RS00850 whiA 157074..157985 (+) 912 WP_000011290.1 DNA-binding protein WhiA -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45672.23 Da        Isoelectric Point: 4.4553

>NTDB_id=331330 EJF26_RS00825 WP_004240351.1 152943..154175(+) (clpX) [Streptococcus oralis subsp. dentisani strain F0392]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=331330 EJF26_RS00825 WP_004240351.1 152943..154175(+) (clpX) [Streptococcus oralis subsp. dentisani strain F0392]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCCGAGGAAG
TCTTGGCAGACTTGTCTGAAGTGCCAAAACCAATCGAGCTCCTCAATATCTTGAACCATTATGTGATCGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTAGCAGTTTACAACCACTACAAACGTATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCTGGGAAAACTTTCTTGGCCCAGACTTTGGCTA
AGAGCTTGAACGTGCCTTTTGCCATTGCAGATGCGACAGCTCTTACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAT
ATTCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGGATTATCTACGTAGATGAAATTGA
CAAAATTGCCAAGAAGAGCGAGAATGTGTCTATCACACGTGACGTTTCTGGTGAAGGAGTGCAACAAGCCCTTCTTAAGA
TTATCGAGGGAACCGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCGCAACAAGAGATGATTCAGGTGGATACT
AAAAACATCCTCTTCATCGTGGGTGGTGCTTTTGATGGCATCGAAGAAATCGTTAAACAACGTTTAGGTGAAAAAGTTAT
CGGTTTCGGCCAAAATAATAAAGCGATTGACGAAAACAGCTCCTACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGC
ATCCTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATACCAAACCTTGCTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGATGAAGCCCTTCAGGAAATCGCCAATAAGGCTATCGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCTATCATCGAAG
AAACCATGCTAGATGTCATGTTTGAAGTACCAAGTCAAGAAAATGTGAAATTGGTCCGCATCACGAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1FYB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.317

100

0.873
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment