Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EJN89_RS10535 Genome accession   NZ_CP034441
Coordinates   2055648..2056043 (+) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain PMB 81-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2050648..2061043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN89_RS10505 - 2051907..2052311 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  EJN89_RS10510 - 2052649..2052741 (+) 93 WP_031864518.1 hypothetical protein -
  EJN89_RS10515 - 2052873..2053106 (+) 234 WP_000384523.1 DUF1146 family protein -
  EJN89_RS10520 murA 2053217..2054482 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EJN89_RS10525 fabZ 2054516..2054956 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EJN89_RS10530 - 2055014..2055454 (-) 441 WP_000846746.1 YwpF-like family protein -
  EJN89_RS10535 ssb 2055648..2056043 (+) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  EJN89_RS10540 sceD 2056432..2057127 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  EJN89_RS10550 tenA 2057651..2058340 (+) 690 WP_000396077.1 thiaminase II -
  EJN89_RS10555 thiD 2058333..2059163 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EJN89_RS10560 thiM 2059147..2059947 (+) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  EJN89_RS10565 thiE 2059940..2060581 (+) 642 WP_000483155.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=331304 EJN89_RS10535 WP_000932692.1 2055648..2056043(+) (ssb) [Staphylococcus aureus strain PMB 81-4]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=331304 EJN89_RS10535 WP_000932692.1 2055648..2056043(+) (ssb) [Staphylococcus aureus strain PMB 81-4]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992

Multiple sequence alignment