Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   EJO50_RS13565 Genome accession   NZ_CP034433
Coordinates   3084887..3085270 (+) Length   127 a.a.
NCBI ID   WP_125975009.1    Uniprot ID   A0A3S8ZV88
Organism   Iodobacter ciconiae strain H11R3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3079887..3090270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJO50_RS13550 (EJO50_13550) - 3080900..3082912 (-) 2013 WP_125975005.1 cytochrome c biogenesis protein ResB -
  EJO50_RS13555 (EJO50_13555) - 3083066..3083689 (-) 624 WP_373280517.1 cytochrome c -
  EJO50_RS13560 (EJO50_13560) yihA 3083930..3084583 (+) 654 WP_125975007.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EJO50_RS13565 (EJO50_13565) pilG 3084887..3085270 (+) 384 WP_125975009.1 PleD family two-component system response regulator Regulator
  EJO50_RS13570 (EJO50_13570) - 3085294..3085650 (+) 357 WP_206434527.1 response regulator -
  EJO50_RS13575 (EJO50_13575) - 3085864..3086379 (+) 516 WP_125975013.1 chemotaxis protein CheW -
  EJO50_RS13580 (EJO50_13580) - 3086530..3088707 (+) 2178 WP_125975015.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14012.37 Da        Isoelectric Point: 7.8213

>NTDB_id=331227 EJO50_RS13565 WP_125975009.1 3084887..3085270(+) (pilG) [Iodobacter ciconiae strain H11R3]
MSTLAGVKVMVIDDSNTIRRSAEIFLGQAGCEVILAEDGFDALAKISDRLPDVIFVDVMMPRLDGYQTCSLIKKNPRYKT
TPVIMLSSKDGLFDRARGRMVGSDEYLTKPFTKDSLLLAVAAHIRSI

Nucleotide


Download         Length: 384 bp        

>NTDB_id=331227 EJO50_RS13565 WP_125975009.1 3084887..3085270(+) (pilG) [Iodobacter ciconiae strain H11R3]
ATGTCAACGCTCGCCGGAGTAAAAGTCATGGTGATTGATGACAGCAATACCATACGTAGAAGCGCGGAGATTTTTTTGGG
GCAAGCCGGTTGCGAGGTTATTCTTGCAGAAGATGGCTTTGATGCTTTAGCTAAGATCAGCGATCGCTTACCGGATGTAA
TTTTTGTTGATGTGATGATGCCAAGGCTCGACGGTTATCAAACCTGCTCGCTGATTAAAAAGAATCCGCGTTATAAAACA
ACCCCCGTTATTATGCTGTCCTCTAAAGATGGTTTGTTTGATCGTGCCAGAGGGCGAATGGTTGGGTCTGATGAGTATTT
AACAAAGCCTTTTACTAAAGACAGTCTGTTATTGGCTGTTGCTGCACATATTCGCAGCATTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S8ZV88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

66.667

96.85

0.646
  vicR Streptococcus mutans UA159

39.831

92.913

0.37

Multiple sequence alignment