Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EIO64_RS18970 Genome accession   NZ_CP034413
Coordinates   680359..680973 (+) Length   204 a.a.
NCBI ID   WP_346730093.1    Uniprot ID   -
Organism   Dysosmobacter welbionis strain J115     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 675359..685973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIO64_RS03550 (EIO64_03500) - 675480..676328 (-) 849 WP_136890785.1 FMN-binding protein -
  EIO64_RS03555 (EIO64_03505) - 676567..677475 (+) 909 WP_025544191.1 LysR family transcriptional regulator -
  EIO64_RS03560 (EIO64_03510) - 678252..678881 (+) 630 WP_158629686.1 TetR/AcrR family transcriptional regulator -
  EIO64_RS03565 (EIO64_03515) - 679214..680473 (+) 1260 WP_346730071.1 ABC transporter transmembrane domain-containing protein -
  EIO64_RS18970 rcrP 680359..680973 (+) 615 WP_346730093.1 ABC transporter ATP-binding protein Regulator
  EIO64_RS03570 (EIO64_03520) rcrQ 680987..682786 (+) 1800 WP_249390785.1 ABC transporter ATP-binding protein Regulator
  EIO64_RS03575 - 683013..683681 (-) 669 WP_249390786.1 3'-5' exonuclease -
  EIO64_RS03580 (EIO64_03525) - 683630..685165 (-) 1536 WP_249390787.1 UvrD-helicase domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22401.31 Da        Isoelectric Point: 4.8166

>NTDB_id=331135 EIO64_RS18970 WP_346730093.1 680359..680973(+) (rcrP) [Dysosmobacter welbionis strain J115]
MVSLAARFYDATEGTVLVDGVDVRDYTFDALYDRIGYVTQKAILFSGDVRGNVLFGASRGKDSDADVQKALELAQASEFV
DRMPGGIHAPIAEGGTNVSGGQKQRLSIARALARRPEILVFDDSFSALDYRTDTRLRAGLDRELKDTTRLIVAQRIGTIR
NADKIIVLDEGRMVGMGTHEELMQTCPIYQEIARSQLSQEELGA

Nucleotide


Download         Length: 615 bp        

>NTDB_id=331135 EIO64_RS18970 WP_346730093.1 680359..680973(+) (rcrP) [Dysosmobacter welbionis strain J115]
CTGGTCAGCCTGGCCGCCCGGTTCTATGATGCCACGGAGGGCACTGTGCTGGTGGACGGGGTGGACGTTCGGGACTACAC
CTTCGACGCCCTGTATGACCGCATCGGCTATGTAACTCAGAAGGCCATCCTGTTCTCCGGAGACGTCCGCGGCAACGTGC
TGTTCGGCGCCAGCCGGGGCAAGGATTCCGATGCGGACGTTCAAAAGGCTCTGGAGCTGGCCCAGGCCAGCGAGTTTGTG
GACAGGATGCCCGGAGGCATCCATGCCCCCATCGCCGAGGGAGGCACCAACGTATCCGGCGGCCAGAAGCAGCGGCTCTC
CATCGCACGGGCCCTGGCGAGGCGCCCGGAGATCCTGGTGTTCGACGACTCCTTCTCCGCCCTGGACTACCGGACGGATA
CCAGGCTCCGTGCCGGCCTGGACCGGGAGCTGAAGGATACCACTCGACTGATCGTGGCTCAACGGATCGGCACCATCCGG
AACGCGGACAAGATCATCGTTCTGGACGAGGGGAGGATGGTGGGGATGGGTACCCACGAGGAACTGATGCAAACCTGCCC
GATCTACCAGGAGATCGCCCGGTCCCAGCTCTCCCAGGAAGAGCTGGGGGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(4-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

58.621

99.51

0.583

Multiple sequence alignment