Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EIO64_RS03570 Genome accession   NZ_CP034413
Coordinates   680987..682786 (+) Length   599 a.a.
NCBI ID   WP_249390785.1    Uniprot ID   -
Organism   Dysosmobacter welbionis strain J115     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 675987..687786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIO64_RS03555 (EIO64_03505) - 676567..677475 (+) 909 WP_025544191.1 LysR family transcriptional regulator -
  EIO64_RS03560 (EIO64_03510) - 678252..678881 (+) 630 WP_158629686.1 TetR/AcrR family transcriptional regulator -
  EIO64_RS03565 (EIO64_03515) - 679214..680473 (+) 1260 WP_346730071.1 ABC transporter transmembrane domain-containing protein -
  EIO64_RS18970 rcrP 680359..680973 (+) 615 WP_346730093.1 ABC transporter ATP-binding protein Regulator
  EIO64_RS03570 (EIO64_03520) rcrQ 680987..682786 (+) 1800 WP_249390785.1 ABC transporter ATP-binding protein Regulator
  EIO64_RS03575 - 683013..683681 (-) 669 WP_249390786.1 3'-5' exonuclease -
  EIO64_RS03580 (EIO64_03525) - 683630..685165 (-) 1536 WP_249390787.1 UvrD-helicase domain-containing protein -
  EIO64_RS03590 (EIO64_03530) - 685806..687410 (-) 1605 WP_119311356.1 ATP-binding protein -
  EIO64_RS03595 (EIO64_03535) - 687482..687688 (-) 207 WP_119311357.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 66039.35 Da        Isoelectric Point: 6.0653

>NTDB_id=331126 EIO64_RS03570 WP_249390785.1 680987..682786(+) (rcrQ) [Dysosmobacter welbionis strain J115]
MPKMMQNRMCAPGKSRRGIGGVLRELFTYSNKLKAPSVAAFCFAVAGAVLTIIGPSLLSRITDLISDALDGEIDLAAIGR
TGVILLVIYGFSAVFTYVEHFIMATVTLELSRDMRQDLSRKINRVPMSYFSKVSYGDILSRITNDVSTLQQALANSLPSM
ISAVAQFLGCLVMMFGTEWRMALAAIAVTALGFLIMAAVMLRSQKYFTARQENLSTLNGYIEEMYSGHDVVRLSRANEQV
KETFGGMNAVLYDAEWRSQFLSGIMQPLMTIIGNLGYVAVCVLGSALAMSGEISFGVIVAFILYVRLFTSPLSTLAQGMT
QMQTAAAAGDHVFDFLHEKELPDETGKRRELSPVQGEVEFEHVRFSYPNHPDKIIIKDFSAHIQPGQKVAIVGPTGAGKT
TMVNLLMRFFEINSGNIKIDGVPTSEMTREGVHDLFSMVLQDTWLFEGTVRENLVYNKTGVTDQQLEEACRACGIYHFIE
TLPHGFDTVLDDSIAISSGQKQLLTIARAMIQGNPMLILDEATSSVDTRTELITQQAMDRLTEHRTSFVIAHRLSTIKNA
DLILVLKDGDIIEQGTHKELLAKGGFYADLYNSQFEKAS

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=331126 EIO64_RS03570 WP_249390785.1 680987..682786(+) (rcrQ) [Dysosmobacter welbionis strain J115]
ATGCCAAAGATGATGCAGAACAGAATGTGCGCGCCGGGAAAGAGCAGGCGCGGCATCGGCGGTGTGCTCAGAGAACTGTT
CACCTATTCCAACAAATTGAAAGCGCCCTCTGTTGCGGCCTTTTGCTTCGCCGTGGCCGGCGCAGTGCTGACCATCATCG
GCCCCAGCCTGCTCAGTCGGATCACGGACCTCATCTCCGACGCCCTGGACGGGGAGATCGATCTGGCCGCCATCGGCCGC
ACCGGCGTAATCCTGCTGGTGATCTACGGCTTCAGTGCCGTCTTTACCTATGTGGAGCACTTCATCATGGCTACGGTCAC
CCTGGAGCTGTCCCGGGATATGCGGCAGGACCTGTCCCGAAAAATCAACCGGGTGCCCATGAGCTACTTCAGCAAGGTGT
CTTATGGTGACATCCTCAGCCGCATCACCAACGACGTAAGTACTCTGCAGCAGGCCCTGGCCAACAGCCTGCCCTCCATG
ATCAGCGCAGTGGCCCAATTCCTCGGCTGTCTGGTGATGATGTTTGGCACTGAGTGGCGTATGGCGCTGGCAGCCATTGC
CGTCACGGCACTGGGCTTCCTCATCATGGCTGCGGTGATGCTCCGGTCCCAGAAGTACTTCACCGCCCGGCAGGAGAACC
TGAGCACCCTGAACGGCTATATTGAGGAGATGTACTCCGGCCACGACGTGGTGCGCCTCTCCCGGGCCAACGAGCAGGTA
AAAGAGACCTTCGGCGGGATGAATGCCGTTCTGTACGACGCAGAGTGGCGCAGCCAGTTCCTCTCCGGCATCATGCAGCC
CCTGATGACTATCATCGGCAACCTGGGCTATGTGGCGGTCTGCGTCCTGGGTTCCGCCCTGGCCATGAGCGGAGAGATCT
CCTTCGGCGTCATTGTTGCGTTCATCCTCTATGTGCGGCTGTTCACCTCTCCCCTGAGCACCCTGGCCCAGGGCATGACC
CAGATGCAGACGGCGGCAGCCGCCGGCGACCACGTCTTCGACTTTCTCCACGAGAAAGAGCTGCCCGATGAGACCGGCAA
GCGCCGCGAACTCTCTCCTGTGCAGGGCGAAGTCGAATTTGAACACGTCCGATTCAGCTATCCGAATCATCCGGATAAGA
TCATCATCAAGGACTTCTCTGCCCATATTCAGCCGGGGCAGAAGGTGGCTATTGTGGGTCCCACCGGAGCGGGCAAGACC
ACGATGGTCAATCTGCTGATGCGCTTCTTTGAGATCAACAGCGGAAACATCAAAATCGACGGCGTGCCCACCTCTGAAAT
GACCCGGGAGGGCGTCCACGACCTGTTCAGCATGGTACTCCAGGACACCTGGCTGTTTGAGGGGACTGTCCGGGAAAATC
TGGTCTACAACAAGACCGGGGTCACGGACCAGCAGCTGGAGGAGGCCTGCCGGGCCTGCGGCATCTATCACTTCATCGAA
ACCCTGCCCCACGGCTTTGATACCGTGCTGGATGACAGCATTGCCATTTCCTCCGGGCAGAAGCAGCTGCTCACCATCGC
CCGGGCCATGATTCAGGGCAATCCCATGCTGATTCTGGACGAGGCCACCTCCTCGGTGGATACCCGCACAGAGCTCATCA
CCCAGCAGGCCATGGACCGGCTGACGGAGCACCGCACCAGCTTTGTCATCGCCCACCGGCTGTCCACCATCAAAAACGCC
GACCTGATTCTGGTGCTGAAGGACGGCGATATCATCGAGCAAGGCACGCACAAGGAACTCCTGGCCAAAGGCGGCTTCTA
CGCTGACCTGTACAACAGCCAGTTTGAAAAGGCCTCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(39-312)

ABC transporter (ABC_tran)

(377-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.787

95.826

0.506

Multiple sequence alignment