Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E3B71_RS11285 Genome accession   NZ_CP042336
Coordinates   1886765..1887502 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GZ04-0086     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1881765..1892502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3B71_RS11270 (E3B71_09420) clpC 1882219..1884792 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  E3B71_RS11275 (E3B71_09425) yfiH 1884922..1885653 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  E3B71_RS11280 (E3B71_09430) rluD 1885650..1886630 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E3B71_RS11285 (E3B71_09435) comL 1886765..1887502 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E3B71_RS11290 (E3B71_09440) raiA 1887773..1888114 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E3B71_RS11295 (E3B71_09445) pheL 1888218..1888265 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  E3B71_RS11300 (E3B71_09450) pheA 1888364..1889524 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  E3B71_RS11305 (E3B71_09455) tyrA 1889567..1890688 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E3B71_RS11310 (E3B71_09460) aroF 1890699..1891769 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E3B71_RS11315 (E3B71_09465) yfiL 1891979..1892344 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=331092 E3B71_RS11285 WP_000197686.1 1886765..1887502(+) (comL) [Escherichia coli strain GZ04-0086]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=331092 E3B71_RS11285 WP_000197686.1 1886765..1887502(+) (comL) [Escherichia coli strain GZ04-0086]
ATGACGCGCATGAAATATTTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment