Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FRV13_RS24070 Genome accession   NZ_CP042298
Coordinates   4442928..4443665 (-) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain RM9088     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4437928..4448665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRV13_RS24040 (FRV13_24045) yfiL 4438086..4438451 (-) 366 WP_044864298.1 DUF2799 domain-containing protein -
  FRV13_RS24045 (FRV13_24050) aroF 4438661..4439731 (+) 1071 WP_044864299.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FRV13_RS24050 (FRV13_24055) tyrA 4439742..4440863 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FRV13_RS24055 (FRV13_24060) pheA 4440906..4442066 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  FRV13_RS24060 (FRV13_24065) pheL 4442165..4442212 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  FRV13_RS24065 (FRV13_24070) raiA 4442316..4442657 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FRV13_RS24070 (FRV13_24075) comL 4442928..4443665 (-) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  FRV13_RS24075 (FRV13_24080) rluD 4443800..4444780 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FRV13_RS24080 (FRV13_24085) yfiH 4444777..4445508 (+) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  FRV13_RS24085 (FRV13_24090) clpC 4445638..4448211 (+) 2574 WP_021553788.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=330975 FRV13_RS24070 WP_000197673.1 4442928..4443665(-) (comL) [Escherichia coli strain RM9088]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=330975 FRV13_RS24070 WP_000197673.1 4442928..4443665(-) (comL) [Escherichia coli strain RM9088]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371