Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EI981_RS14615 Genome accession   NZ_CP034346
Coordinates   3335815..3337677 (-) Length   620 a.a.
NCBI ID   WP_126999310.1    Uniprot ID   A0A3Q9IDC8
Organism   Paenibacillus lutimineralis strain MBLB1234     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3330815..3342677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EI981_RS14585 (EI981_14585) - 3331317..3331826 (-) 510 WP_126999300.1 RrF2 family transcriptional regulator -
  EI981_RS14590 (EI981_14590) - 3332033..3332692 (+) 660 WP_126999302.1 FMN-dependent NADH-azoreductase -
  EI981_RS29650 - 3332968..3333180 (-) 213 WP_227011431.1 hypothetical protein -
  EI981_RS14600 (EI981_14600) - 3333404..3333961 (-) 558 WP_227011432.1 GNAT family N-acetyltransferase -
  EI981_RS14605 (EI981_14605) - 3334156..3334959 (-) 804 WP_162616181.1 MerR family transcriptional regulator -
  EI981_RS14610 (EI981_14610) - 3335090..3335584 (-) 495 WP_227011433.1 GNAT family N-acetyltransferase -
  EI981_RS14615 (EI981_14615) rcrQ 3335815..3337677 (-) 1863 WP_126999310.1 ABC transporter ATP-binding protein Regulator
  EI981_RS14620 (EI981_14620) rcrP 3337674..3339434 (-) 1761 WP_126999312.1 ABC transporter ATP-binding protein Regulator
  EI981_RS14625 (EI981_14625) - 3339525..3339947 (-) 423 WP_162616182.1 MarR family winged helix-turn-helix transcriptional regulator -
  EI981_RS14630 (EI981_14630) - 3340046..3341113 (-) 1068 WP_193556371.1 HAMP domain-containing sensor histidine kinase -
  EI981_RS14635 (EI981_14635) - 3341110..3341784 (-) 675 WP_126999316.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 620 a.a.        Molecular weight: 68200.31 Da        Isoelectric Point: 6.9288

>NTDB_id=330817 EI981_RS14615 WP_126999310.1 3335815..3337677(-) (rcrQ) [Paenibacillus lutimineralis strain MBLB1234]
MSEKMESRRPARGPMGGPPGMHGPAEKPKDFKNTWGKLILYCKNYMPVIVIALIIAAVGTVLQIIGPDKLKDMTNEITKG
LPALINGQPVVGAIDMDAVVNIAILLVFFYASSALLSFVQNYIMATVTAKISKNMRTGISQKINKLPLKYFDKTSYGDVL
SRATNDVDTIGQTLNQSIGTMVSAVTMFVGSLIMMFYTNWILALTAIGSTIIGFVLMTVIMSNSKKHFTAQQEGLGEING
HIEEVYSGHNVVKAYNGGKAAKEIFEGINKTLYDSGWKSQFLSGLMMPIMSFIGNLGYLAVCVVGAVLAMNGTISFGVIV
AFMLYIRLFTQPLAQLAQAAQTMLRTAAASERVFEFFEEEEMADESEKAKKLANVKGDVEFKHVKFGYDKDKTIIHDFSA
MVRAGQKVAIVGPTGAGKTTMINLLMRFYELDGGEILMDGIPTHQTTRENVHEQFCMVLQDTWLFEGTIKENIKYSKQGV
TDEEVITACKAVGLHHFIRTLPDGYNTVLNDQASLSAGQKQLLTIARAMIQNAPLLILDEATSSVDTRTERKVQEAMDKL
MVGRTSFVIAHRLSTIRNADMILVMKDGDIIESGNHVELLEKGGFYADLYNSQFEVQQAI

Nucleotide


Download         Length: 1863 bp        

>NTDB_id=330817 EI981_RS14615 WP_126999310.1 3335815..3337677(-) (rcrQ) [Paenibacillus lutimineralis strain MBLB1234]
ATGAGTGAGAAAATGGAAAGTAGAAGACCCGCCAGAGGACCAATGGGGGGACCTCCCGGTATGCATGGTCCAGCCGAAAA
GCCAAAAGATTTCAAAAATACATGGGGCAAATTGATTCTATATTGTAAAAATTATATGCCTGTCATTGTGATTGCACTCA
TCATCGCGGCTGTTGGTACTGTATTACAAATCATAGGGCCGGATAAATTAAAAGACATGACCAATGAAATTACCAAAGGG
CTTCCCGCGCTAATCAACGGGCAACCTGTCGTAGGTGCAATTGATATGGATGCCGTTGTGAATATAGCCATTTTACTCGT
ATTCTTCTACGCGTCCTCTGCGCTGTTAAGCTTTGTTCAAAACTACATTATGGCAACAGTAACAGCCAAAATATCAAAAA
ATATGCGGACCGGCATTTCTCAAAAAATCAATAAATTACCGCTTAAATACTTTGATAAAACAAGCTATGGCGACGTACTC
AGTCGCGCGACGAATGACGTGGACACTATAGGACAAACGTTAAATCAAAGTATCGGTACAATGGTCAGCGCAGTAACCAT
GTTTGTTGGCTCTCTGATTATGATGTTCTACACGAACTGGATTCTGGCGTTGACCGCAATCGGTTCTACCATTATCGGTT
TTGTGTTAATGACGGTGATCATGTCAAATTCAAAGAAACATTTTACAGCACAACAAGAAGGCCTTGGTGAAATTAATGGC
CATATTGAAGAGGTTTATTCGGGACATAATGTTGTTAAGGCCTATAACGGTGGCAAGGCGGCAAAAGAGATATTCGAGGG
AATTAATAAAACGCTTTATGACAGCGGCTGGAAGTCTCAATTTCTGTCGGGATTAATGATGCCTATTATGAGCTTTATTG
GAAACTTAGGTTATCTAGCCGTGTGCGTAGTCGGAGCAGTACTTGCCATGAACGGGACTATTTCCTTTGGTGTAATCGTT
GCGTTTATGTTGTATATACGCCTGTTCACGCAGCCGCTTGCGCAGTTAGCCCAAGCAGCTCAAACGATGTTAAGAACCGC
TGCCGCAAGCGAGCGCGTCTTTGAATTTTTCGAAGAAGAAGAAATGGCAGATGAAAGTGAAAAAGCAAAAAAACTTGCTA
ATGTCAAAGGCGATGTAGAATTTAAACACGTTAAATTCGGCTACGATAAGGATAAAACGATAATCCACGACTTCTCAGCA
ATGGTCAGAGCAGGGCAAAAAGTCGCAATCGTCGGCCCGACAGGCGCAGGAAAAACGACGATGATTAACCTTTTAATGCG
TTTCTACGAGCTGGATGGCGGCGAGATATTGATGGACGGTATACCTACGCATCAAACCACCAGAGAAAACGTACATGAAC
AATTTTGCATGGTACTGCAAGACACATGGCTTTTTGAGGGAACGATCAAAGAAAACATCAAATACAGCAAGCAAGGCGTC
ACAGATGAGGAAGTCATTACCGCATGTAAGGCAGTGGGATTGCATCATTTTATACGAACGCTTCCCGATGGGTACAATAC
CGTATTGAATGACCAAGCAAGCTTATCGGCAGGACAAAAACAGCTTCTTACTATCGCGCGAGCCATGATCCAAAATGCAC
CGCTCTTGATTCTAGATGAGGCGACAAGCTCGGTCGATACACGCACGGAACGTAAAGTTCAGGAAGCGATGGATAAGCTA
ATGGTTGGTAGAACATCATTTGTTATTGCACACAGACTTTCGACCATACGCAACGCTGATATGATTCTTGTCATGAAGGA
TGGCGATATTATAGAAAGCGGCAATCACGTCGAGCTTCTAGAAAAAGGCGGATTCTACGCGGACCTGTATAACAGCCAGT
TTGAAGTACAACAGGCTATATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(396-543)

ABC transporter transmembrane region (ABC_membrane)

(50-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9IDC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.461

94.032

0.54

Multiple sequence alignment