Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EI981_RS14620 Genome accession   NZ_CP034346
Coordinates   3337674..3339434 (-) Length   586 a.a.
NCBI ID   WP_126999312.1    Uniprot ID   A0A3S9UYY8
Organism   Paenibacillus lutimineralis strain MBLB1234     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3332674..3344434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EI981_RS29650 - 3332968..3333180 (-) 213 WP_227011431.1 hypothetical protein -
  EI981_RS14600 (EI981_14600) - 3333404..3333961 (-) 558 WP_227011432.1 GNAT family N-acetyltransferase -
  EI981_RS14605 (EI981_14605) - 3334156..3334959 (-) 804 WP_162616181.1 MerR family transcriptional regulator -
  EI981_RS14610 (EI981_14610) - 3335090..3335584 (-) 495 WP_227011433.1 GNAT family N-acetyltransferase -
  EI981_RS14615 (EI981_14615) rcrQ 3335815..3337677 (-) 1863 WP_126999310.1 ABC transporter ATP-binding protein Regulator
  EI981_RS14620 (EI981_14620) rcrP 3337674..3339434 (-) 1761 WP_126999312.1 ABC transporter ATP-binding protein Regulator
  EI981_RS14625 (EI981_14625) - 3339525..3339947 (-) 423 WP_162616182.1 MarR family winged helix-turn-helix transcriptional regulator -
  EI981_RS14630 (EI981_14630) - 3340046..3341113 (-) 1068 WP_193556371.1 HAMP domain-containing sensor histidine kinase -
  EI981_RS14635 (EI981_14635) - 3341110..3341784 (-) 675 WP_126999316.1 response regulator transcription factor -
  EI981_RS14640 (EI981_14640) - 3341939..3344311 (+) 2373 WP_126999318.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65135.75 Da        Isoelectric Point: 5.2976

>NTDB_id=330818 EI981_RS14620 WP_126999312.1 3337674..3339434(-) (rcrP) [Paenibacillus lutimineralis strain MBLB1234]
MIRIFKYLKPKEWIQAVISLVFIVVQVWLDLKLPDYMAEITQLVQTSDSEMSEIWKAGGYMLLCALGSLVSAILVGFFAA
RIASSFSQRLRSLLFNKVESFSMEEINRFSTSSLITRSTNDITQIQMLVTMGLQIIIKAPIMAVWAVTKIAGKGFEWTLA
TGVAVLILLVLVAFIMVFVLPKFRKMQTLTDNLTRVARENLTGLRVVRAYNAEDYQEQKFEKANEELTYTNLFTNRAMSV
MMPVMSMIMSGLSLAIYWIGAYLINAAEATDRLTLFSNMVVFSSYAMQVIMAFLMLVMIFIMLPRASVSAKRVNEVLDTQ
PTIKDGHVTEGLQGLKGEVTFNHVSFKYPDAADYVIEDVSFTVKQGETIAFIGSTGSGKSTLINLVPRFFDVTEGEVLID
GVNVKEYSIESLNNKIGYVPQKAVMFKGTVSSNVAYGDNGSAGYNEDEVKRAVQIAQGADFVEKMDDGYNALISQGGTNV
SGGQKQRLAIARAVCRKPEIYIFDDSFSALDYKTDRVLRSVLKKETAGVTSMIVAQRIGTIMDADQIIVLDEGKVVGNGT
HKELLRDCDVYREIAMSQLSEEELIS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=330818 EI981_RS14620 WP_126999312.1 3337674..3339434(-) (rcrP) [Paenibacillus lutimineralis strain MBLB1234]
ATGATAAGAATTTTCAAGTATCTCAAGCCCAAGGAATGGATACAAGCGGTTATCAGTCTTGTATTCATTGTCGTGCAAGT
ATGGCTTGATTTGAAATTACCGGATTACATGGCTGAAATTACTCAGCTTGTCCAAACGTCAGATAGTGAGATGAGTGAAA
TCTGGAAAGCCGGAGGTTATATGCTCCTGTGTGCACTTGGGAGTCTTGTGTCCGCTATCCTGGTTGGCTTTTTTGCAGCA
CGGATTGCATCGTCTTTCTCGCAAAGGCTTCGTAGTCTGCTATTTAACAAGGTCGAATCCTTTTCAATGGAGGAAATAAA
CCGCTTTTCTACTTCGAGTCTGATTACCCGTTCCACCAACGATATTACGCAGATTCAGATGCTTGTCACCATGGGATTAC
AAATCATCATCAAAGCACCGATCATGGCGGTCTGGGCCGTTACAAAGATTGCTGGAAAAGGATTTGAATGGACACTTGCG
ACGGGTGTAGCTGTTTTGATTTTGCTGGTCTTGGTCGCGTTTATTATGGTATTCGTCCTACCGAAATTCAGAAAAATGCA
GACGCTCACCGACAACTTGACTCGTGTGGCTAGGGAAAACCTTACAGGCTTGCGCGTAGTTCGAGCTTATAACGCCGAGG
ATTATCAGGAACAAAAGTTTGAAAAGGCTAACGAAGAACTTACCTACACCAATTTGTTCACTAACCGTGCCATGTCGGTA
ATGATGCCGGTTATGAGTATGATTATGAGCGGACTTAGCCTTGCAATTTATTGGATTGGTGCCTATCTAATCAATGCGGC
TGAAGCAACGGACCGATTGACGCTTTTCTCCAATATGGTTGTTTTCTCATCCTACGCGATGCAAGTCATTATGGCCTTCT
TGATGCTAGTCATGATATTCATTATGCTTCCGAGAGCCAGCGTTTCCGCAAAACGTGTCAATGAGGTGCTGGATACGCAG
CCGACTATAAAAGACGGTCATGTTACTGAGGGCTTACAGGGATTAAAAGGCGAGGTCACATTCAATCATGTCAGCTTTAA
GTACCCGGATGCGGCTGATTATGTTATAGAGGATGTCAGTTTTACAGTAAAACAAGGTGAAACGATCGCGTTTATCGGCT
CAACCGGGAGCGGGAAATCAACCCTTATCAACCTTGTACCCCGTTTTTTTGATGTGACTGAAGGCGAAGTACTGATTGAC
GGCGTGAATGTAAAAGAATATAGCATTGAATCGCTTAATAATAAAATCGGCTATGTGCCGCAAAAGGCAGTCATGTTCAA
AGGAACGGTGAGTTCCAACGTAGCCTATGGAGATAATGGAAGCGCCGGTTACAATGAAGATGAAGTTAAAAGAGCCGTAC
AGATAGCACAGGGCGCGGACTTTGTGGAAAAGATGGACGATGGTTACAATGCGCTGATTTCACAAGGTGGCACAAATGTA
TCGGGTGGTCAGAAACAACGTCTCGCGATTGCTCGAGCAGTCTGCCGTAAACCTGAAATATATATCTTCGATGATTCGTT
TTCGGCCCTTGACTATAAAACAGATCGTGTATTACGCAGCGTGCTGAAAAAGGAAACGGCTGGTGTGACAAGTATGATTG
TAGCTCAGCGGATTGGTACCATCATGGACGCCGATCAAATCATTGTATTAGATGAAGGCAAAGTGGTGGGAAATGGAACT
CACAAGGAGCTGCTCCGCGACTGTGATGTATACAGGGAAATCGCTATGTCACAATTGAGTGAGGAGGAATTGATATCATG
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9UYY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.872

100

0.568

Multiple sequence alignment