Detailed information NTG0330785

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EJA05_RS04310
• Genome accession: NZ_CP034338
• Coordinates: 901547..902413 (-)
• Length: 288 a.a.
• NCBI ID: WP_125857445.1
• Uniprot ID: -
• Organism: Pseudomonas oryziphila strain 1257
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 896547..907413

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJA05_RS04275 (EJA05_04275)	-	896909..898204 (-)	1296	WP_125857441.1	NAD(P)/FAD-dependent oxidoreductase	-
EJA05_RS04280 (EJA05_04280)	-	898289..898462 (-)	174	WP_110991747.1	DUF3094 family protein	-
EJA05_RS04285 (EJA05_04285)	-	898594..899223 (-)	630	WP_125462595.1	DUF1780 domain-containing protein	-
EJA05_RS04290 (EJA05_04290)	-	899279..899710 (-)	432	WP_125857442.1	hypothetical protein	-
EJA05_RS04295 (EJA05_04295)	-	899797..900504 (+)	708	WP_125857443.1	energy-coupling factor ABC transporter permease	-
EJA05_RS04300 (EJA05_04300)	yacG	900727..900927 (-)	201	WP_110991743.1	DNA gyrase inhibitor YacG	-
EJA05_RS04305 (EJA05_04305)	coaE	900924..901547 (-)	624	WP_125857444.1	dephospho-CoA kinase	-
EJA05_RS04310 (EJA05_04310)	pilD	901547..902413 (-)	867	WP_125857445.1	A24 family peptidase	Machinery gene
EJA05_RS04315 (EJA05_04315)	-	902416..903624 (-)	1209	WP_125857446.1	type II secretion system F family protein	-
EJA05_RS04320 (EJA05_04320)	-	903836..904246 (+)	411	WP_125857447.1	pilin	-
EJA05_RS04330 (EJA05_04330)	-	904542..905837 (+)	1296	WP_125857448.1	phage integrase central domain-containing protein	-
EJA05_RS04335 (EJA05_04335)	-	906127..907083 (+)	957	WP_125857449.1	hypothetical protein	-
EJA05_RS04340 (EJA05_04340)	-	907130..907399 (+)	270	WP_371316857.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31575.80 Da
• Isoelectric Point: 7.6864

>NTDB_id=330785 EJA05_RS04310 WP_125857445.1 901547..902413(-) (pilD) [Pseudomonas oryziphila strain 1257]
MNAWALVVEYPAFFYSLAVVLGLLVGSFLNVLAYRLPIMLERQWQREAQEVLGLPGAAHERFDLYLPASRCPHCQHRIRA
WENIPLVSYLVLRGRCSACKGRISARYPLVELGCALLSLLVAWHFGPGIEALLVMVLTWGLIALSLIDAEHQLLPDVLVL
PLLWLGLVVNAFGLLVPLADAVWGAVAGYLSLWSVFWVFKLLTGKDGIGQGDFKLLAMLGAWGGWQILPLTLMLGSLAGA
LIGLILVRLRRAQMGVALPFGPYLAIAGWIAVLWGDEIVASYLQLLGT

Nucleotide

• Length: 867 bp

>NTDB_id=330785 EJA05_RS04310 WP_125857445.1 901547..902413(-) (pilD) [Pseudomonas oryziphila strain 1257]
ATGAATGCCTGGGCCTTGGTCGTCGAATATCCTGCGTTTTTCTACAGCCTGGCCGTGGTGCTGGGGTTGTTGGTGGGCAG
TTTTCTGAATGTGCTGGCGTACCGGCTGCCGATCATGCTCGAGCGCCAGTGGCAGCGGGAGGCGCAGGAGGTGCTGGGGC
TGCCTGGGGCCGCGCACGAGCGCTTCGACCTGTACTTGCCGGCCTCTCGCTGCCCCCATTGCCAGCACCGGATTCGTGCG
TGGGAGAACATTCCGCTGGTGAGTTACCTGGTGTTGCGCGGGCGCTGCTCGGCATGCAAGGGGCGGATCAGTGCACGCTA
TCCCTTGGTGGAGCTTGGGTGTGCCCTGCTTTCGCTGCTGGTGGCGTGGCATTTCGGGCCGGGCATCGAAGCCTTGCTGG
TGATGGTGCTGACCTGGGGCCTGATCGCTTTGAGCCTGATCGATGCCGAACACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGCTCTGGCTGGGCCTGGTGGTCAATGCCTTCGGGCTGCTGGTGCCGCTGGCCGATGCAGTATGGGGCGCGGTGGC
GGGTTACCTGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAGCTTTTGACCGGCAAGGACGGCATTGGCCAGGGCGACTTCA
AGCTGCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGATGCTCGGGTCGTTGGCCGGGGCG
CTGATCGGGCTGATTCTGGTGCGCCTGCGCCGGGCGCAGATGGGCGTTGCGCTGCCCTTCGGGCCTTATCTGGCCATTGC
GGGCTGGATCGCAGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.237	96.528	0.514
pilD	Acinetobacter baumannii D1279779	52.19	95.139	0.497
pilD	Acinetobacter nosocomialis M2	51.661	94.097	0.486
pilD	Neisseria gonorrhoeae MS11	51.493	93.056	0.479
pilD	Vibrio campbellii strain DS40M4	48.387	96.875	0.469