Detailed information NTG0330762

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EI693_RS04065
• Genome accession: NZ_CP034337
• Coordinates: 839789..840655 (-)
• Length: 288 a.a.
• NCBI ID: WP_125462600.1
• Uniprot ID: -
• Organism: Pseudomonas oryziphila strain 2014
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 834789..845655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EI693_RS04030 (EI693_04030)	-	835324..836619 (-)	1296	WP_110991748.1	NAD(P)/FAD-dependent oxidoreductase	-
EI693_RS04035 (EI693_04035)	-	836704..836877 (-)	174	WP_110991747.1	DUF3094 family protein	-
EI693_RS04040 (EI693_04040)	-	837009..837638 (-)	630	WP_125462595.1	DUF1780 domain-containing protein	-
EI693_RS04045 (EI693_04045)	-	837694..838125 (-)	432	WP_125462596.1	hypothetical protein	-
EI693_RS04050 (EI693_04050)	-	838212..838919 (+)	708	WP_125462597.1	energy-coupling factor ABC transporter permease	-
EI693_RS04055 (EI693_04055)	yacG	838969..839169 (-)	201	WP_125462598.1	DNA gyrase inhibitor YacG	-
EI693_RS04060 (EI693_04060)	coaE	839166..839789 (-)	624	WP_125462599.1	dephospho-CoA kinase	-
EI693_RS04065 (EI693_04065)	pilD	839789..840655 (-)	867	WP_125462600.1	A24 family peptidase	Machinery gene
EI693_RS04070 (EI693_04070)	-	840658..841866 (-)	1209	WP_125462601.1	type II secretion system F family protein	-
EI693_RS04075 (EI693_04075)	-	842078..842488 (+)	411	WP_125462602.1	pilin	-
EI693_RS04085 (EI693_04085)	-	842929..843486 (-)	558	WP_189654517.1	hypothetical protein	-
EI693_RS04090 (EI693_04090)	-	843810..844964 (+)	1155	WP_125466150.1	Fic family protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31507.75 Da
• Isoelectric Point: 7.9777

>NTDB_id=330762 EI693_RS04065 WP_125462600.1 839789..840655(-) (pilD) [Pseudomonas oryziphila strain 2014]
MNAWTLIVEHPAFFYSLAVVLGLLVGSFLNVLAYRLPIMLERQWQREAQAVLGLPGAAHERFDLCLPASRCPHCQHRIRA
WENIPVLSYLALRGRCSACKGRISARYPLVELGCALLSLLVAWHFGPGIEALLVMVLTWGLIALSLIDAEHQLLPDVLVL
PLLWLGLVVNAFGLLVPLTDAVWGAVAGYLSLWSVFWVFKLLTGKDGIGQGDFKLLAMLGAWGGWQILPLTLMLGSLTGA
LIGLILVRLRRAQMGVALPFGPYLAIAGWIAVLWGDEIVASYLQLLGT

Nucleotide

• Length: 867 bp

>NTDB_id=330762 EI693_RS04065 WP_125462600.1 839789..840655(-) (pilD) [Pseudomonas oryziphila strain 2014]
ATGAATGCCTGGACCTTAATCGTCGAACATCCTGCGTTTTTCTACAGCCTGGCCGTGGTGCTGGGGTTGTTGGTGGGCAG
CTTTCTCAATGTGCTGGCCTACCGCTTGCCGATCATGCTCGAGCGCCAGTGGCAGCGGGAGGCGCAGGCAGTGCTGGGGT
TGCCGGGGGCCGCGCACGAGCGCTTCGACCTGTGCCTGCCGGCTTCTCGCTGCCCCCATTGCCAACACCGGATCCGTGCG
TGGGAGAACATTCCGGTCTTGAGTTACCTGGCGTTGCGCGGTCGCTGTTCGGCGTGCAAGGGGCGGATCAGTGCGCGCTA
TCCCTTGGTCGAGCTAGGGTGTGCCCTGCTTTCGCTGCTGGTGGCCTGGCATTTCGGGCCGGGCATCGAAGCCTTGCTGG
TGATGGTGCTGACCTGGGGCCTGATCGCTTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGACGTGCTGGTGCTG
CCGCTGCTCTGGCTGGGGCTGGTGGTCAATGCCTTCGGGCTGCTGGTGCCGCTGACCGATGCGGTATGGGGCGCGGTGGC
GGGTTACTTGAGCCTGTGGTCAGTGTTCTGGGTATTCAAGCTTTTGACCGGCAAGGACGGCATTGGCCAGGGCGACTTCA
AGCTGCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGATGCTCGGGTCGCTGACCGGGGCG
CTGATCGGGCTGATTCTGGTGCGCCTGCGCCGGGCGCAGATGGGCGTTGCGCTGCCCTTCGGGCCTTATCTGGCCATTGC
GGGCTGGATCGCAGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.597	96.528	0.517
pilD	Acinetobacter baumannii D1279779	50.719	96.528	0.49
pilD	Acinetobacter nosocomialis M2	49.64	96.528	0.479
pilD	Neisseria gonorrhoeae MS11	50.746	93.056	0.472
pilD	Vibrio campbellii strain DS40M4	48.029	96.875	0.465