Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FQB22_RS00770 Genome accession   NZ_CP042252
Coordinates   138471..140867 (-) Length   798 a.a.
NCBI ID   WP_016886347.1    Uniprot ID   -
Organism   Bacillus licheniformis strain KNU11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 133471..145867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS00750 - 136418..137476 (-) 1059 WP_016885530.1 AI-2E family transporter -
  FQB22_RS00755 - 137564..137695 (-) 132 WP_003183926.1 YrzQ family protein -
  FQB22_RS00760 - 137711..137902 (-) 192 WP_016885531.1 hypothetical protein -
  FQB22_RS00765 - 137918..138442 (-) 525 WP_261383933.1 PRC-barrel domain-containing protein -
  FQB22_RS00770 recD/recD2/recDB 138471..140867 (-) 2397 WP_016886347.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FQB22_RS00775 - 140919..141569 (-) 651 WP_016885534.1 tetratricopeptide repeat protein -
  FQB22_RS00780 mnmA 141664..142782 (-) 1119 WP_016885535.1 tRNA 2-thiouridine(34) synthase MnmA -
  FQB22_RS00785 - 142878..144017 (-) 1140 WP_016885536.1 cysteine desulfurase family protein -
  FQB22_RS00790 cymR 144038..144454 (-) 417 WP_009327777.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89775.35 Da        Isoelectric Point: 4.9464

>NTDB_id=330640 FQB22_RS00770 WP_016886347.1 138471..140867(-) (recD/recD2/recDB) [Bacillus licheniformis strain KNU11]
MQRHNPDQIEMEEASFVKGTVAAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVISSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQILAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELIALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=330640 FQB22_RS00770 WP_016886347.1 138471..140867(-) (recD/recD2/recDB) [Bacillus licheniformis strain KNU11]
ATGCAGCGCCATAACCCGGACCAAATTGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTTGCGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTATTAAAAGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACCGGTTACTTTCCTTTGATCCATGAAGATGATATCTACACTTTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTACCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAGAAAACGGCCGAGGAAATTGTTAATAAGCTTGGGGAAGGTGCGATCAACAAAATTTTAAGCG
ACGGGGCCGTCCTGTATGATGTTCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTGCAGCAGCATCAG
GGGCTCGAACAGATTATGATCTCCCTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTACGA
AGCGGAAACGCTCGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAAGATGTTGAAGGAATCGGCTTTATCAAAGCAG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAAGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGAAACGAGACAGCTCATCATCGAGACGCAAAAGCTGTTAAACCAGTCAGC
AGGCGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCCATACAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACGGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTGCTGGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGGCTGCCGGCCGT
AACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGACGGCTGC
TCATCATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTGTTCAAGGCGATTCCCGACCGGATACAGGTG
ATTATGGTCGGAGACGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTAAGGGATCTTTTGGCATCGAATGTCAT
TTCTTCTGTCAGATTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCGGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTTATTCGCTGCCGCCAGCAGCAGATCAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTCGGCCAGGGATATTCAGATTTTGGCTCCGATGTACAGGGG
AGCAGCCGGTATCAACGAGTTAAACGCGCTTTTGCAGGGCATCCTGAATCCCCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGCGATGTTGTGTACCGTACCGGCGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCACAACGTGTTTAACGGTGAC
ATGGGTGAGATCGTCTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGATATGGCCGTCATCTCTTTTGACGGGAA
TGAAATTACCTTTACAAAAAAAGATTTTAACCAATTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAGGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCCATCACA
AGAAGCAAGAAATTCCTGATTTTGTGCGGGGAAGAAGAAGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCTGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCAGCAGGCGGCGCATGAAGAGGATGAAGAGCTCATAGCGCTGCAAAAAGAGCTGC
CTTTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-660)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

81.602

100

0.817

Multiple sequence alignment