Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | D8X56_RS07575 | Genome accession | NZ_CP034314 |
| Coordinates | 1547682..1548257 (+) | Length | 191 a.a. |
| NCBI ID | WP_125303519.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain HP42K | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1542682..1553257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8X56_RS07550 (D8X56_07550) | uvrD | 1543373..1545418 (+) | 2046 | WP_206426572.1 | DNA helicase UvrD | - |
| D8X56_RS07555 (D8X56_07555) | flgA | 1545415..1546071 (+) | 657 | WP_125303515.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| D8X56_RS07560 (D8X56_07560) | - | 1546081..1546644 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| D8X56_RS07565 (D8X56_07565) | coaD | 1546644..1547117 (+) | 474 | WP_033762445.1 | pantetheine-phosphate adenylyltransferase | - |
| D8X56_RS07570 (D8X56_07570) | tmk | 1547119..1547694 (+) | 576 | WP_125303517.1 | dTMP kinase | - |
| D8X56_RS07575 (D8X56_07575) | comFC | 1547682..1548257 (+) | 576 | WP_125303519.1 | ComF family protein | Machinery gene |
| D8X56_RS07580 (D8X56_07580) | - | 1548290..1550325 (+) | 2036 | Protein_1438 | N-6 DNA methylase | - |
| D8X56_RS07585 (D8X56_07585) | - | 1550322..1551515 (+) | 1194 | WP_125303521.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21364.94 Da Isoelectric Point: 9.0940
>NTDB_id=330640 D8X56_RS07575 WP_125303519.1 1547682..1548257(+) (comFC) [Helicobacter pylori strain HP42K]
MRCLTCLKLSFKPLCSNCLNDLPLSLKIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAVDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFKFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAVDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFKFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=330640 D8X56_RS07575 WP_125303519.1 1547682..1548257(+) (comFC) [Helicobacter pylori strain HP42K]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCCTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCATTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTTAAATTCAAAGGCGATGAGAATTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCCTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCATTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGACTAATGCCGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTTAAATTCAAAGGCGATGAGAATTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |