Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | D8X56_RS01745 | Genome accession | NZ_CP034314 |
| Coordinates | 339773..340177 (+) | Length | 134 a.a. |
| NCBI ID | WP_125301619.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain HP42K | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 334773..345177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8X56_RS01710 (D8X56_01710) | - | 334952..335890 (-) | 939 | WP_125301612.1 | tetraacyldisaccharide 4'-kinase | - |
| D8X56_RS01715 (D8X56_01715) | - | 335887..336669 (-) | 783 | WP_125301615.1 | NAD+ synthase | - |
| D8X56_RS01725 (D8X56_01725) | ilvC | 336917..337909 (+) | 993 | WP_125301617.1 | ketol-acid reductoisomerase | - |
| D8X56_RS01730 (D8X56_01730) | minD | 337933..338739 (+) | 807 | WP_001019048.1 | septum site-determining protein MinD | - |
| D8X56_RS01735 (D8X56_01735) | minE | 338736..338969 (+) | 234 | WP_000051414.1 | cell division topological specificity factor MinE | - |
| D8X56_RS01740 (D8X56_01740) | dprA | 338976..339776 (+) | 801 | WP_108564882.1 | DNA-processing protein DprA | Machinery gene |
| D8X56_RS01745 (D8X56_01745) | dprB | 339773..340177 (+) | 405 | WP_125301619.1 | Holliday junction resolvase RuvX | Machinery gene |
| D8X56_RS01750 (D8X56_01750) | - | 340308..340775 (+) | 468 | WP_206426570.1 | tetratricopeptide repeat protein | - |
| D8X56_RS01755 (D8X56_01755) | - | 340963..341301 (+) | 339 | WP_125301623.1 | hypothetical protein | - |
| D8X56_RS01760 (D8X56_01760) | - | 341285..341845 (+) | 561 | WP_125301625.1 | hypothetical protein | - |
| D8X56_RS01765 (D8X56_01765) | - | 341935..342816 (-) | 882 | WP_125301627.1 | RluA family pseudouridine synthase | - |
| D8X56_RS01770 (D8X56_01770) | recJ | 342816..344366 (-) | 1551 | WP_125301629.1 | single-stranded-DNA-specific exonuclease RecJ | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15234.65 Da Isoelectric Point: 8.2822
>NTDB_id=330629 D8X56_RS01745 WP_125301619.1 339773..340177(+) (dprB) [Helicobacter pylori strain HP42K]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGRKNKWLAIKDGRLDSLSACRILERYCQKVLKNH
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGRKNKWLAIKDGRLDSLSACRILERYCQKVLKNH
Nucleotide
Download Length: 405 bp
>NTDB_id=330629 D8X56_RS01745 WP_125301619.1 339773..340177(+) (dprB) [Helicobacter pylori strain HP42K]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGACAATTTGGAGCATTTGGGTAGGAAAAACAAGTGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGAAGGTTTTAAAAAATC
ATTAG
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGACAATTTGGAGCATTTGGGTAGGAAAAACAAGTGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGAAGGTTTTAAAAAATC
ATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
96.269 |
100 |
0.963 |