Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   EHC68_RS26195 Genome accession   NZ_CP034306
Coordinates   1877285..1877395 (-) Length   36 a.a.
NCBI ID   WP_269467447.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20151116002-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1872285..1882395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC68_RS26190 (EHC68_26530) - 1875275..1876840 (-) 1566 WP_050505239.1 EAL domain-containing protein -
  EHC68_RS26195 (EHC68_26535) pilJ 1877285..1877395 (-) 111 WP_269467447.1 methyl-accepting chemotaxis protein Machinery gene
  EHC68_RS26200 (EHC68_26540) - 1877719..1878558 (-) 840 WP_085576863.1 hypothetical protein -
  EHC68_RS26205 (EHC68_26545) tnpA 1878801..1879223 (-) 423 WP_031855796.1 IS200/IS605 family transposase -
  EHC68_RS26210 (EHC68_26550) - 1879405..1880559 (-) 1155 WP_085576882.1 methyl-accepting chemotaxis protein -
  EHC68_RS26215 (EHC68_26555) - 1880615..1881862 (-) 1248 WP_031855795.1 OmpP1/FadL family transporter -
  EHC68_RS26220 (EHC68_26560) - 1881918..1882253 (-) 336 WP_031855794.1 hypothetical protein -

Sequence

Protein


Download         Length: 36 a.a.        Molecular weight: 3978.59 Da        Isoelectric Point: 4.2645

>NTDB_id=330610 EHC68_RS26195 WP_269467447.1 1877285..1877395(-) (pilJ) [Vibrio parahaemolyticus strain 20151116002-3]
MRIYSDEISTVLDMIESISEQTNLLALNAAIKAPRA

Nucleotide


Download         Length: 111 bp        

>NTDB_id=330610 EHC68_RS26195 WP_269467447.1 1877285..1877395(-) (pilJ) [Vibrio parahaemolyticus strain 20151116002-3]
TTGAGGATTTATTCGGATGAAATAAGTACTGTTTTAGATATGATTGAATCGATATCTGAACAGACGAATTTGTTAGCGTT
AAATGCAGCAATTAAAGCTCCAAGAGCGTGA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(5-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

56.25

88.889

0.5

Multiple sequence alignment