Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FQU84_RS20715 Genome accession   NZ_CP042250
Coordinates   3818367..3819104 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain BCE049     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3813367..3824104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQU84_RS20700 (FQU84_20700) clpC 3813821..3816394 (-) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator
  FQU84_RS20705 (FQU84_20705) yfiH 3816524..3817255 (-) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  FQU84_RS20710 (FQU84_20710) rluD 3817252..3818232 (-) 981 WP_000079114.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FQU84_RS20715 (FQU84_20715) comL 3818367..3819104 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FQU84_RS20720 (FQU84_20720) raiA 3819374..3819715 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FQU84_RS20725 (FQU84_20725) pheL 3819819..3819866 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  FQU84_RS20730 (FQU84_20730) pheA 3819965..3821125 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  FQU84_RS20735 (FQU84_20735) tyrA 3821168..3822289 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FQU84_RS20740 (FQU84_20740) aroF 3822300..3823370 (-) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FQU84_RS20745 (FQU84_20745) yfiL 3823580..3823945 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=330609 FQU84_RS20715 WP_000197686.1 3818367..3819104(+) (comL) [Escherichia coli strain BCE049]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=330609 FQU84_RS20715 WP_000197686.1 3818367..3819104(+) (comL) [Escherichia coli strain BCE049]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376