Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FQU84_RS15995 Genome accession   NZ_CP042250
Coordinates   2832245..2832901 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain BCE049     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2827245..2837901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQU84_RS15965 (FQU84_15965) yecA 2828497..2829162 (-) 666 WP_000847882.1 UPF0149 family protein YecA -
  FQU84_RS15985 (FQU84_15985) pgsA 2829811..2830359 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FQU84_RS15990 (FQU84_15990) uvrC 2830416..2832248 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  FQU84_RS15995 (FQU84_15995) letA 2832245..2832901 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FQU84_RS16000 (FQU84_16000) yecU 2833197..2833373 (+) 177 WP_123009286.1 protein YecU -
  FQU84_RS16005 (FQU84_16005) yecF 2833360..2833584 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  FQU84_RS16010 (FQU84_16010) sdiA 2833652..2834374 (-) 723 WP_001154255.1 transcriptional regulator SdiA -
  FQU84_RS16015 (FQU84_16015) tcyN 2834604..2835356 (-) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  FQU84_RS16020 (FQU84_16020) tcyL 2835353..2836021 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  FQU84_RS16025 (FQU84_16025) dcyD 2836036..2837022 (-) 987 WP_001128237.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=330596 FQU84_RS15995 WP_000611328.1 2832245..2832901(-) (letA) [Escherichia coli strain BCE049]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=330596 FQU84_RS15995 WP_000611328.1 2832245..2832901(-) (letA) [Escherichia coli strain BCE049]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482