Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   EHC68_RS03245 Genome accession   NZ_CP034305
Coordinates   624045..624659 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20151116002-3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 619045..629659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC68_RS27335 - 620481..620720 (+) 240 WP_409010799.1 biotin/lipoyl-containing protein -
  EHC68_RS27340 - 620810..620890 (+) 81 WP_409010800.1 hypothetical protein -
  EHC68_RS27345 - 621023..621181 (+) 159 WP_409010796.1 biotin/lipoyl-containing protein -
  EHC68_RS27350 - 621347..621391 (+) 45 Protein_522 hypothetical protein -
  EHC68_RS27355 - 621641..621811 (+) 171 WP_409010797.1 2-oxo acid dehydrogenase subunit E2 -
  EHC68_RS27360 - 621834..622034 (+) 201 Protein_524 2-oxo acid dehydrogenase subunit E2 -
  EHC68_RS27365 - 622138..622203 (+) 66 WP_409010801.1 2-oxo acid dehydrogenase subunit E2 -
  EHC68_RS03240 (EHC68_03275) lpdA 622502..623917 (+) 1416 Protein_526 dihydrolipoyl dehydrogenase -
  EHC68_RS03245 (EHC68_03280) opaR 624045..624659 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  EHC68_RS03250 (EHC68_03285) hpt 624978..625508 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  EHC68_RS03255 (EHC68_03290) can 625583..626251 (-) 669 WP_005462578.1 carbonate dehydratase -
  EHC68_RS03260 (EHC68_03295) - 626535..628205 (+) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  EHC68_RS03270 (EHC68_03305) - 628458..629375 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=330585 EHC68_RS03245 WP_005479697.1 624045..624659(-) (opaR) [Vibrio parahaemolyticus strain 20151116002-3]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=330585 EHC68_RS03245 WP_005479697.1 624045..624659(-) (opaR) [Vibrio parahaemolyticus strain 20151116002-3]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGAGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment