Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   EHC69_RS14030 Genome accession   NZ_CP034298
Coordinates   2833311..2833925 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20160303005-1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2828311..2838925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC69_RS14005 (EHC69_14165) - 2828595..2829512 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  EHC69_RS14015 (EHC69_14175) - 2829765..2831435 (-) 1671 WP_023624255.1 SulP family inorganic anion transporter -
  EHC69_RS14020 (EHC69_14180) can 2831719..2832387 (+) 669 WP_005462578.1 carbonate dehydratase -
  EHC69_RS14025 (EHC69_14185) hpt 2832462..2832992 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  EHC69_RS14030 (EHC69_14190) opaR 2833311..2833925 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  EHC69_RS14035 (EHC69_14195) lpdA 2834053..2835480 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  EHC69_RS14040 (EHC69_14200) aceF 2835762..2837666 (-) 1905 WP_114867832.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=330536 EHC69_RS14030 WP_005479697.1 2833311..2833925(+) (opaR) [Vibrio parahaemolyticus strain 20160303005-1]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=330536 EHC69_RS14030 WP_005479697.1 2833311..2833925(+) (opaR) [Vibrio parahaemolyticus strain 20160303005-1]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAACCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment