Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   EHC64_RS03420 Genome accession   NZ_CP034289
Coordinates   663930..664544 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140722001-1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 658930..669544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC64_RS03410 (EHC64_03485) aceF 660214..662106 (+) 1893 WP_140103383.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  EHC64_RS03415 (EHC64_03490) lpdA 662375..663802 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  EHC64_RS03420 (EHC64_03495) opaR 663930..664544 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  EHC64_RS03425 (EHC64_03500) hpt 664863..665393 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  EHC64_RS03430 (EHC64_03505) can 665467..666135 (-) 669 WP_005462578.1 carbonate dehydratase -
  EHC64_RS03435 (EHC64_03510) - 666419..668089 (+) 1671 WP_069546226.1 SulP family inorganic anion transporter -
  EHC64_RS03445 (EHC64_03520) - 668341..669258 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=330451 EHC64_RS03420 WP_005479697.1 663930..664544(-) (opaR) [Vibrio parahaemolyticus strain 20140722001-1]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=330451 EHC64_RS03420 WP_005479697.1 663930..664544(-) (opaR) [Vibrio parahaemolyticus strain 20140722001-1]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment