Detailed information NTG0330410

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: FP481_RS12885
• Genome accession: NZ_CP042157
• Coordinates: 2541753..2542439 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692872.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain B3-17D
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2536753..2547439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FP481_RS12840 (FP481_12840)	rpmA	2537524..2537808 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
FP481_RS12845 (FP481_12845)	-	2537820..2538140 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
FP481_RS12850 (FP481_12850)	rplU	2538146..2538454 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
FP481_RS12855 (FP481_12855)	mreD	2538690..2539220 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
FP481_RS12860 (FP481_12860)	mreC	2539220..2540062 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
FP481_RS12865 (FP481_12865)	-	2540261..2540380 (-)	120	WP_000840602.1	hypothetical protein	-
FP481_RS12870 (FP481_12870)	-	2540454..2540927 (-)	474	WP_001236734.1	DUF4930 family protein	-
FP481_RS12875 (FP481_12875)	-	2541087..2541284 (+)	198	WP_000025835.1	hypothetical protein	-
FP481_RS12880 (FP481_12880)	-	2541401..2541685 (-)	285	WP_000171857.1	hypothetical protein	-
FP481_RS12885 (FP481_12885)	ysxA/radC	2541753..2542439 (-)	687	WP_000692872.1	DNA repair protein RadC	Machinery gene
FP481_RS12890 (FP481_12890)	-	2542436..2543143 (-)	708	WP_000261115.1	A24 family peptidase	-
FP481_RS12895 (FP481_12895)	-	2543413..2544684 (-)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
FP481_RS12900 (FP481_12900)	-	2544697..2547327 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25326.30 Da
• Isoelectric Point: 7.4360

>NTDB_id=330410 FP481_RS12885 WP_000692872.1 2541753..2542439(-) (ysxA/radC) [Staphylococcus aureus strain B3-17D]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGKDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=330410 FP481_RS12885 WP_000692872.1 2541753..2542439(-) (ysxA/radC) [Staphylococcus aureus strain B3-17D]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGAAAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.232	98.246	0.513
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373