Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EHC70_RS05285 Genome accession   NZ_CP034285
Coordinates   1059021..1060424 (+) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140624012-1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054021..1065424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC70_RS05260 (EHC70_05360) rsxB 1054532..1055128 (-) 597 WP_159404048.1 electron transport complex subunit RsxB -
  EHC70_RS05265 (EHC70_05365) rsxA 1055132..1055710 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  EHC70_RS05280 (EHC70_05380) uvrB 1056701..1058731 (+) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  EHC70_RS05285 (EHC70_05385) luxO 1059021..1060424 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EHC70_RS05290 (EHC70_05390) luxU 1060427..1060765 (+) 339 WP_025500803.1 quorum-sensing phosphorelay protein LuxU -
  EHC70_RS05295 (EHC70_05395) - 1060842..1061735 (-) 894 WP_005494500.1 YvcK family protein -
  EHC70_RS05300 (EHC70_05400) moaA 1062031..1063020 (+) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  EHC70_RS05305 (EHC70_05405) moaB 1063122..1063634 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  EHC70_RS05310 (EHC70_05410) moaC 1063661..1064140 (+) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  EHC70_RS05315 (EHC70_05415) moaD 1064137..1064394 (+) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  EHC70_RS05320 (EHC70_05420) moaE 1064396..1064851 (+) 456 WP_058965733.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=330410 EHC70_RS05285 WP_005461534.1 1059021..1060424(+) (luxO) [Vibrio parahaemolyticus strain 20140624012-1]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=330410 EHC70_RS05285 WP_005461534.1 1059021..1060424(+) (luxO) [Vibrio parahaemolyticus strain 20140624012-1]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTTTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
TTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGACGTTTCCGCGAAGACTTATACTACCGGTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368

Multiple sequence alignment