Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | EI069_RS10565 | Genome accession | NZ_CP034242 |
| Coordinates | 2187137..2187517 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii isolate 09A16CRGN0014 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2182137..2192517
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EI069_RS10535 (EI069_10535) | tadA | 2182255..2182758 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| EI069_RS10540 (EI069_10540) | - | 2182765..2183889 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| EI069_RS10545 (EI069_10545) | ung | 2183886..2184599 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| EI069_RS10550 (EI069_10550) | - | 2184650..2185246 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| EI069_RS10555 (EI069_10555) | gspK | 2185477..2186436 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| EI069_RS10560 (EI069_10560) | xcpW | 2186436..2187137 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| EI069_RS10565 (EI069_10565) | xcpV | 2187137..2187517 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| EI069_RS10570 (EI069_10570) | - | 2187507..2188061 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| EI069_RS10575 (EI069_10575) | - | 2188071..2188679 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| EI069_RS10580 (EI069_10580) | - | 2188717..2189490 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| EI069_RS10585 (EI069_10585) | - | 2189508..2189849 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| EI069_RS10590 (EI069_10590) | - | 2189861..2190841 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| EI069_RS10595 (EI069_10595) | kdsB | 2190853..2191614 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=330104 EI069_RS10565 WP_000836911.1 2187137..2187517(-) (xcpV) [Acinetobacter baumannii isolate 09A16CRGN0014]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=330104 EI069_RS10565 WP_000836911.1 2187137..2187517(-) (xcpV) [Acinetobacter baumannii isolate 09A16CRGN0014]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |