Detailed information NTG0330070

Bioinformatically predicted

Overview

• Name: opaR
• Type: Regulator
• Locus tag: EIJ81_RS15025
• Genome accession: NZ_CP034240
• Coordinates: 2746036..2746641 (+)
• Length: 201 a.a.
• NCBI ID: WP_012551079.1
• Uniprot ID: -
• Organism: Aliivibrio salmonicida strain VS224
• Function: regulation of Dns (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	2738596..2748878	2746036..2746641	within	0

Gene organization within MGE regions

Location: 2738596..2748878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EIJ81_RS14980 (EIJ81_14980)	-	2738596..2740083 (-)	1488	WP_012551073.1	IS66-like element ISVsa2 family transposase	-
EIJ81_RS14985 (EIJ81_14985)	-	2740353..2741234 (+)	882	WP_012548944.1	IS982-like element ISVsa6 family transposase	-
EIJ81_RS14990 (EIJ81_14990)	tnpB	2741243..2741509 (-)	267	WP_049940348.1	IS66 family insertion sequence element accessory protein TnpB	-
EIJ81_RS14995 (EIJ81_14995)	-	2741506..2741820 (-)	315	WP_012548925.1	hypothetical protein	-
EIJ81_RS15000 (EIJ81_15000)	-	2741908..2742678 (-)	771	WP_012551074.1	ABC transporter permease	-
EIJ81_RS15005 (EIJ81_15005)	-	2742678..2743595 (-)	918	WP_012551075.1	ABC transporter ATP-binding protein	-
EIJ81_RS15010 (EIJ81_15010)	can	2743692..2744351 (+)	660	WP_012551076.1	carbonate dehydratase	-
EIJ81_RS15015 (EIJ81_15015)	-	2744442..2744693 (-)	252	WP_012551077.1	hypothetical protein	-
EIJ81_RS15020 (EIJ81_15020)	hpt	2745180..2745710 (-)	531	WP_012551078.1	hypoxanthine phosphoribosyltransferase	-
EIJ81_RS15025 (EIJ81_15025)	opaR	2746036..2746641 (+)	606	WP_012551079.1	TetR/AcrR family transcriptional regulator	Regulator
EIJ81_RS15030 (EIJ81_15030)	-	2746659..2748148 (-)	1490	Protein_2617	IS66-like element ISVsa2 family transposase	-
EIJ81_RS15035 (EIJ81_15035)	tnpB	2748220..2748567 (-)	348	WP_012548924.1	IS66 family insertion sequence element accessory protein TnpB	-
EIJ81_RS15040 (EIJ81_15040)	-	2748564..2748878 (-)	315	WP_012548925.1	hypothetical protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 23461.62 Da
• Isoelectric Point: 5.3217

>NTDB_id=330070 EIJ81_RS15025 WP_012551079.1 2746036..2746641(+) (opaR) [Aliivibrio salmonicida strain VS224]
METIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNRVEQQFHNFIL
NSISLDRDVRSNLHSLLVNIIDTVQMDNKWIKVWFEWSTSTREEVWPLFLSTQVNNQKVIHDMFAEGIERNEVCNDHTPE
NLAKMLHGICYSVFIQANRNSSYEELEQTANCFLNMLCIYK

Nucleotide

• Length: 606 bp

>NTDB_id=330070 EIJ81_RS15025 WP_012551079.1 2746036..2746641(+) (opaR) [Aliivibrio salmonicida strain VS224]
ATGGAAACGATCCAAAAAAGACCGAGAACTAGGCTATCTCCAGAGAAACGAAAAGAACAACTACTTGATATTGCGATTGA
GGTTTTTTCTCAACGTGGTATTGGTCGTGGCGGTCATGCAGATATAGCAGAAATTGCTCAAGTATCTGTTGCTACGGTAT
TTAATTACTTCCCAACCCGAGAAGATCTGGTTGATGATGTATTAAATCGAGTTGAACAACAATTTCATAACTTCATTCTC
AATTCAATCTCATTAGACCGAGATGTACGCTCCAATCTTCACTCTTTACTCGTGAACATCATAGATACAGTTCAAATGGA
TAATAAGTGGATTAAAGTGTGGTTTGAATGGAGCACCTCTACTCGCGAAGAAGTATGGCCTCTTTTCTTAAGCACTCAAG
TGAATAACCAAAAAGTTATTCATGATATGTTTGCTGAAGGGATTGAGCGTAACGAAGTATGTAATGATCATACCCCTGAA
AACTTAGCTAAAATGCTTCATGGGATTTGTTACTCTGTATTTATTCAAGCAAACCGTAATAGCTCTTATGAAGAACTAGA
ACAAACGGCAAATTGCTTTTTAAATATGCTGTGTATCTATAAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, tetR family (TetR_N) (21-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
opaR	Vibrio parahaemolyticus RIMD 2210633	61.5	99.502	0.612
hapR	Vibrio cholerae C6706	60.804	99.005	0.602
hapR	Vibrio cholerae strain A1552	60.804	99.005	0.602