Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | EH204_RS14705 | Genome accession | NZ_CP034237 |
| Coordinates | 3303241..3304086 (-) | Length | 281 a.a. |
| NCBI ID | WP_010302946.1 | Uniprot ID | A0AAI9L1D5 |
| Organism | Pectobacterium carotovorum subsp. carotovorum strain JR1.1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3298241..3309086
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EH204_RS14680 (EH204_14855) | - | 3298432..3299202 (-) | 771 | WP_039532377.1 | ABC transporter ATP-binding protein | - |
| EH204_RS14685 (EH204_14860) | - | 3299204..3300241 (-) | 1038 | WP_161509587.1 | FecCD family ABC transporter permease | - |
| EH204_RS14690 (EH204_14865) | - | 3300238..3301302 (-) | 1065 | WP_138256024.1 | ABC transporter substrate-binding protein | - |
| EH204_RS14695 (EH204_14870) | - | 3301625..3302650 (+) | 1026 | WP_010302944.1 | LLM class flavin-dependent oxidoreductase | - |
| EH204_RS14700 (EH204_14875) | ypdK | 3303006..3303080 (+) | 75 | WP_099606229.1 | membrane protein YpdK | - |
| EH204_RS14705 (EH204_14880) | pilD | 3303241..3304086 (-) | 846 | WP_010302946.1 | prepilin peptidase | Machinery gene |
| EH204_RS14710 (EH204_14885) | - | 3304176..3304922 (-) | 747 | WP_039471200.1 | type II secretion system protein N | - |
| EH204_RS14715 (EH204_14890) | gspM | 3304912..3305406 (-) | 495 | WP_039471198.1 | type II secretion system protein GspM | - |
| EH204_RS14720 (EH204_14895) | gspL | 3305403..3306679 (-) | 1277 | Protein_2904 | type II secretion system protein GspL | - |
| EH204_RS14725 (EH204_14900) | gspK | 3306676..3307662 (-) | 987 | WP_039471195.1 | type II secretion system minor pseudopilin GspK | - |
| EH204_RS14730 (EH204_14905) | gspJ | 3307659..3308309 (-) | 651 | WP_161509588.1 | type II secretion system minor pseudopilin GspJ | - |
| EH204_RS14735 (EH204_14910) | gspI | 3308309..3308674 (-) | 366 | WP_010302972.1 | type II secretion system minor pseudopilin GspI | - |
Sequence
Protein
Download Length: 281 a.a. Molecular weight: 31271.14 Da Isoelectric Point: 6.4529
>NTDB_id=330032 EH204_RS14705 WP_010302946.1 3303241..3304086(-) (pilD) [Pectobacterium carotovorum subsp. carotovorum strain JR1.1]
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADSDPDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGLRKEDTAKPLAFGPWLAIGGVFGVIMNGFNL
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADSDPDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGLRKEDTAKPLAFGPWLAIGGVFGVIMNGFNL
Nucleotide
Download Length: 846 bp
>NTDB_id=330032 EH204_RS14705 WP_010302946.1 3303241..3304086(-) (pilD) [Pectobacterium carotovorum subsp. carotovorum strain JR1.1]
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCGTGGCCGATTCCGATCCTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCGGTAAAAGATAATATCCCGCTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGCCATCAATCGGTCTCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATCCTGCTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGTTGCTGTTTAATCTGTCAGGGACATTTGTCTCATTGAATGATGCCGTAGTCGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCAACGGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGGGCTTGGCTTGGCTGGCAGGCATTGCCCAATCTGGTTTTGGTGGCGGCGCTGAGT
GGGCTGGTCGTGACTCTCATCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATCGGCGGGGTGTTCGGCGTGATAATGAACGGATTCAATCTGTAG
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCGTGGCCGATTCCGATCCTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCGGTAAAAGATAATATCCCGCTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGCCATCAATCGGTCTCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATCCTGCTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGTTGCTGTTTAATCTGTCAGGGACATTTGTCTCATTGAATGATGCCGTAGTCGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCAACGGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGGGCTTGGCTTGGCTGGCAGGCATTGCCCAATCTGGTTTTGGTGGCGGCGCTGAGT
GGGCTGGTCGTGACTCTCATCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATCGGCGGGGTGTTCGGCGTGATAATGAACGGATTCAATCTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
51.292 |
96.441 |
0.495 |
| pilD | Vibrio campbellii strain DS40M4 |
47.037 |
96.085 |
0.452 |
| pilD | Neisseria gonorrhoeae MS11 |
46.36 |
92.883 |
0.431 |
| pilD | Acinetobacter baumannii D1279779 |
43.223 |
97.153 |
0.42 |
| pilD | Acinetobacter nosocomialis M2 |
42.857 |
97.153 |
0.416 |