Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EH164_RS14400 Genome accession   NZ_CP034225
Coordinates   3012106..3012726 (-) Length   206 a.a.
NCBI ID   WP_023481698.1    Uniprot ID   -
Organism   Kosakonia sp. CCTCC M2018092     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3007106..3017726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH164_RS14385 (EH164_14385) helD 3007345..3009399 (-) 2055 WP_124968813.1 DNA helicase IV -
  EH164_RS14390 (EH164_14390) - 3009522..3009968 (+) 447 WP_124968815.1 YccF domain-containing protein -
  EH164_RS14395 (EH164_14395) yccS 3009983..3012109 (+) 2127 WP_124968817.1 YccS family putative transporter -
  EH164_RS14400 (EH164_14400) sxy/tfoX 3012106..3012726 (-) 621 WP_023481698.1 TfoX/Sxy family DNA transformation protein Regulator
  EH164_RS14405 (EH164_14405) sulA 3012943..3013452 (+) 510 WP_023481514.1 SOS-induced cell division inhibitor SulA -
  EH164_RS14415 (EH164_14415) ompA 3013820..3014869 (+) 1050 WP_023481315.1 porin OmpA -
  EH164_RS14420 (EH164_14420) matP 3014956..3015408 (-) 453 WP_023481810.1 macrodomain Ter protein MatP -
  EH164_RS14425 (EH164_14425) - 3015591..3017336 (+) 1746 WP_124968819.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23396.09 Da        Isoelectric Point: 9.9951

>NTDB_id=329892 EH164_RS14400 WP_023481698.1 3012106..3012726(-) (sxy/tfoX) [Kosakonia sp. CCTCC M2018092]
MEDLSYQRIYQSREYLTSLGQISHRAHFGGYSLAVDNIVFAMIAEGELYLRACDESAQYDVVRRAPLLSLNKRGRQISLN
YFYVSDSVWGDRGLLLKLSTLALDAAKREKAQREKLFRLRDLPNISSQLEFQLQQAGIKDAQILRLLGAKVCWLRLRKMN
KQLSVKVLFALEGAIVGIHEAALPASRRQALLEWSNDVMNKGANPL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=329892 EH164_RS14400 WP_023481698.1 3012106..3012726(-) (sxy/tfoX) [Kosakonia sp. CCTCC M2018092]
ATGGAAGACTTATCTTATCAACGGATATATCAATCGCGCGAATATCTCACTTCACTCGGTCAAATTAGCCATCGCGCCCA
CTTTGGTGGTTATAGCCTTGCAGTAGATAACATCGTTTTTGCGATGATAGCCGAGGGGGAACTTTACTTACGCGCCTGTG
ATGAAAGCGCACAGTATGATGTAGTCCGGCGTGCACCACTTTTAAGTCTCAACAAGCGGGGGCGTCAGATATCGTTAAAT
TATTTTTATGTTAGCGACAGTGTATGGGGTGACCGCGGCTTGCTGCTGAAGCTTTCTACGCTTGCGCTTGATGCGGCAAA
ACGGGAGAAAGCGCAGCGCGAAAAACTTTTTCGTCTGCGCGATCTACCCAATATCTCCAGTCAACTCGAGTTTCAACTGC
AGCAGGCCGGCATCAAAGATGCGCAAATCCTGCGGCTACTTGGTGCAAAAGTTTGCTGGCTCCGACTTCGGAAAATGAAC
AAACAACTCAGTGTAAAAGTGTTATTTGCACTGGAAGGGGCCATTGTCGGCATTCATGAAGCAGCGCTTCCGGCGAGTCG
ACGGCAGGCGCTGCTTGAGTGGTCTAATGATGTGATGAATAAAGGAGCAAACCCTCTCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

53.659

99.515

0.534

Multiple sequence alignment