Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CLA_RS04715 Genome accession   NC_012039
Coordinates   906076..906843 (-) Length   255 a.a.
NCBI ID   WP_012661653.1    Uniprot ID   B9KCI1
Organism   Campylobacter lari RM2100     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 901076..911843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLA_RS04690 (CLA1319) flhA 901620..903779 (-) 2160 WP_012661648.1 flagellar biosynthesis protein FlhA -
  CLA_RS04695 (CLA1320) - 903772..904176 (-) 405 WP_012661649.1 Rrf2 family transcriptional regulator -
  CLA_RS04700 (CLA1321) rpsO 904352..904624 (+) 273 WP_012661650.1 30S ribosomal protein S15 -
  CLA_RS04705 (CLA1322) - 904813..905706 (-) 894 WP_012661651.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CLA_RS04710 (CLA1323) ruvX 905693..906079 (-) 387 WP_012661652.1 Holliday junction resolvase RuvX -
  CLA_RS04715 (CLA1324) dprA 906076..906843 (-) 768 WP_012661653.1 DNA-processing protein DprA Machinery gene
  CLA_RS04720 (CLA1325) - 906830..907897 (-) 1068 WP_012661654.1 divergent polysaccharide deacetylase family protein -
  CLA_RS04725 (CLA1326) ilvC 907899..908921 (-) 1023 WP_012661655.1 ketol-acid reductoisomerase -
  CLA_RS04730 (CLA1327) - 909031..910971 (+) 1941 WP_012661656.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28690.35 Da        Isoelectric Point: 6.8615

>NTDB_id=32982 CLA_RS04715 WP_012661653.1 906076..906843(-) (dprA) [Campylobacter lari RM2100]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAVIGSRKMSVYTKNCLIELVSLLKKAKVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESEGTNLLLATKKANLIHDFDEFVKMFGELHYEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=32982 CLA_RS04715 WP_012661653.1 906076..906843(-) (dprA) [Campylobacter lari RM2100]
ATGAAATTTATTGAAAATATTGAGGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAGGGCAACTTAGA
ACTTTTAAATGCTAGAAAAGTAGCTGTTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGCCTCATTGAGTTAG
TATCTTTGTTAAAAAAAGCTAAGGTTTGTGTGGTAAGCGGTGGGGCTTTGGGGGTGGATATTCAAGCAGCTAAAATAGCT
TACCCTCAAACTATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAATACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTAGCCTTAAGTGAAAACGAAGGAAATTACAAGGCAAAACCCTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGTGAGGTTGTTATAATAGCTCAAGCTGATTTAAAAAGTGGCTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGTGAAGGGACAAATTTGCTTTTAGCCACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAGTTTGTAAAAATGTTTGGAGAGCTTCATTATGAGCAAAGTGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTGGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAGCTT
GAGGGTTTGGTAGAGATATCTGGAGTGAAAATAAGAGCTTGTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9KCI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.207

90.98

0.557
  dprA Helicobacter pylori 26695

45.161

97.255

0.439

Multiple sequence alignment