Detailed information NTG0329769

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: EBA29_RS01820
• Genome accession: NZ_CP034203
• Coordinates: 375581..376729 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain 83
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 370581..381729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EBA29_RS01800 (EBA29_00369)	-	370999..371682 (-)	684	WP_071181529.1	ABC transporter ATP-binding protein	-
EBA29_RS01805 (EBA29_00370)	-	371697..373112 (-)	1416	WP_128496442.1	ABC transporter permease	-
EBA29_RS01810 (EBA29_00372)	-	373325..374008 (+)	684	WP_014416901.1	response regulator transcription factor	-
EBA29_RS01815 (EBA29_00373)	-	373995..375422 (+)	1428	WP_100261600.1	HAMP domain-containing sensor histidine kinase	-
EBA29_RS01820 (EBA29_00375)	rapC	375581..376729 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
EBA29_RS01825 (EBA29_00376)	phrC	376713..376832 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
EBA29_RS01830	-	376984..377079 (-)	96	WP_021495118.1	YjcZ family sporulation protein	-
EBA29_RS01835 (EBA29_00377)	-	377174..378538 (-)	1365	WP_072177353.1	aspartate kinase	-
EBA29_RS01840 (EBA29_00379)	ceuB	378952..379905 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
EBA29_RS01845 (EBA29_00380)	-	379895..380842 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
EBA29_RS01850 (EBA29_00381)	-	380836..381594 (+)	759	WP_012116804.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=329769 EBA29_RS01820 WP_014304340.1 375581..376729(+) (rapC) [Bacillus velezensis strain 83]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=329769 EBA29_RS01820 WP_014304340.1 375581..376729(+) (rapC) [Bacillus velezensis strain 83]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTATGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGT
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568