Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | EHF33_RS02885 | Genome accession | NZ_CP034183 |
| Coordinates | 580414..581643 (+) | Length | 409 a.a. |
| NCBI ID | WP_124867717.1 | Uniprot ID | A0A3G8YA91 |
| Organism | Deinococcus psychrotolerans strain S14-83 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 575414..586643
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHF33_RS02860 (EHF33_02860) | - | 576330..576596 (+) | 267 | WP_124867707.1 | acylphosphatase | - |
| EHF33_RS02865 (EHF33_02865) | - | 576884..578200 (+) | 1317 | WP_124867709.1 | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein | - |
| EHF33_RS02870 (EHF33_02870) | - | 578197..579183 (+) | 987 | WP_124867711.1 | homoserine O-acetyltransferase family protein | - |
| EHF33_RS02875 (EHF33_02875) | scpB | 579186..579710 (-) | 525 | WP_124867713.1 | SMC-Scp complex subunit ScpB | - |
| EHF33_RS02880 (EHF33_02880) | - | 579707..580333 (-) | 627 | WP_124867715.1 | L-threonylcarbamoyladenylate synthase | - |
| EHF33_RS02885 (EHF33_02885) | pilC | 580414..581643 (+) | 1230 | WP_124867717.1 | type II secretion system F family protein | Machinery gene |
| EHF33_RS02890 (EHF33_02890) | ispH | 581694..582710 (-) | 1017 | WP_124867719.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| EHF33_RS02895 (EHF33_02895) | - | 582772..583449 (-) | 678 | WP_338135030.1 | hypothetical protein | - |
| EHF33_RS02900 (EHF33_02900) | - | 583446..584609 (-) | 1164 | WP_124867721.1 | phosphopentomutase | - |
| EHF33_RS02905 (EHF33_02905) | lptB | 584808..585479 (+) | 672 | WP_241191305.1 | LPS export ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 44685.81 Da Isoelectric Point: 9.7663
>NTDB_id=329715 EHF33_RS02885 WP_124867717.1 580414..581643(+) (pilC) [Deinococcus psychrotolerans strain S14-83]
MPVFEYRVRDRSGKILKSQTEADTIAQVRDSLRAKGLLIVDIKSPKGGMQTDLNDLKIPFLSDRPPGLKPIAIFSKQLAT
LINAGVPLVQSLTILQRQIEHKGLQNVVRKVRNDVEAGTPLSEAIAKFPKVFNRLYINLVRAGETSGTLDSVLERIAEFQ
EKDLATRGKIKSAMTYPVIVLVFALLITYFLLTTIVPQFGGMLTQLGAELPLLTRVLMAMSDFLKTKTIVIVLIVAALVF
AYRYYYSTKKGRRVVDDFKLKIPVFGTLIQRSAIASFARTFGLLINSGVNIIESLEITKGTANNAIVEDTIENAKNVVMV
GEQMSGSLAASPVFPPMVVSMVAIGEETGALDTMLAKVADFYDREVEEAIEGLTAAIEPIMIVFLGAIVGLIVAGMFLPM
FSIISALSK
MPVFEYRVRDRSGKILKSQTEADTIAQVRDSLRAKGLLIVDIKSPKGGMQTDLNDLKIPFLSDRPPGLKPIAIFSKQLAT
LINAGVPLVQSLTILQRQIEHKGLQNVVRKVRNDVEAGTPLSEAIAKFPKVFNRLYINLVRAGETSGTLDSVLERIAEFQ
EKDLATRGKIKSAMTYPVIVLVFALLITYFLLTTIVPQFGGMLTQLGAELPLLTRVLMAMSDFLKTKTIVIVLIVAALVF
AYRYYYSTKKGRRVVDDFKLKIPVFGTLIQRSAIASFARTFGLLINSGVNIIESLEITKGTANNAIVEDTIENAKNVVMV
GEQMSGSLAASPVFPPMVVSMVAIGEETGALDTMLAKVADFYDREVEEAIEGLTAAIEPIMIVFLGAIVGLIVAGMFLPM
FSIISALSK
Nucleotide
Download Length: 1230 bp
>NTDB_id=329715 EHF33_RS02885 WP_124867717.1 580414..581643(+) (pilC) [Deinococcus psychrotolerans strain S14-83]
ATGCCGGTCTTTGAATACCGCGTGCGTGATCGCAGCGGCAAGATTCTCAAATCCCAAACTGAAGCGGACACCATTGCTCA
GGTGCGCGACTCGTTGCGTGCCAAGGGTCTCCTGATCGTCGACATCAAATCACCCAAAGGCGGGATGCAGACTGATCTTA
ACGACCTCAAGATCCCCTTCCTGAGTGACCGCCCACCAGGCCTCAAGCCGATTGCTATTTTCTCCAAGCAGCTCGCCACC
CTGATTAATGCCGGGGTACCCTTAGTGCAGTCGCTCACTATTTTACAGCGTCAAATCGAACATAAGGGGCTGCAAAACGT
CGTCCGCAAAGTCCGCAATGACGTCGAAGCAGGCACGCCGCTGTCTGAAGCGATTGCCAAGTTTCCCAAAGTTTTCAATC
GCCTCTACATCAATTTGGTGCGTGCAGGCGAAACCAGCGGCACGCTCGACAGCGTATTGGAGAGAATCGCTGAATTTCAA
GAGAAAGATTTGGCAACTCGCGGGAAGATCAAGAGTGCCATGACCTATCCAGTAATTGTTTTAGTTTTTGCTCTCTTAAT
TACTTATTTTCTGCTCACTACCATTGTTCCGCAGTTCGGGGGAATGTTGACACAGCTTGGCGCAGAATTGCCTCTACTCA
CTCGGGTCTTGATGGCGATGTCTGACTTCTTGAAGACGAAGACCATTGTGATCGTTCTGATTGTTGCGGCCCTCGTTTTT
GCCTACCGCTATTATTACTCCACCAAAAAAGGTCGGCGTGTCGTCGATGATTTCAAATTAAAAATTCCTGTTTTCGGCAC
TTTGATACAGCGAAGCGCCATAGCGAGCTTCGCCCGTACCTTCGGCCTACTGATCAACAGCGGCGTCAATATCATTGAAA
GTTTGGAAATCACCAAAGGTACGGCTAATAACGCCATTGTCGAAGACACCATCGAAAATGCCAAAAACGTGGTGATGGTC
GGCGAACAGATGAGTGGCAGCCTAGCAGCCAGTCCAGTGTTTCCGCCGATGGTGGTGAGCATGGTGGCGATTGGCGAAGA
AACCGGCGCCCTCGACACTATGCTTGCTAAAGTCGCCGACTTTTATGACCGCGAAGTGGAAGAAGCTATTGAAGGTCTCA
CTGCAGCCATTGAGCCGATTATGATTGTCTTTCTCGGGGCCATCGTTGGGTTAATCGTGGCCGGGATGTTCCTGCCAATG
TTCAGCATTATCAGCGCACTGAGTAAGTAA
ATGCCGGTCTTTGAATACCGCGTGCGTGATCGCAGCGGCAAGATTCTCAAATCCCAAACTGAAGCGGACACCATTGCTCA
GGTGCGCGACTCGTTGCGTGCCAAGGGTCTCCTGATCGTCGACATCAAATCACCCAAAGGCGGGATGCAGACTGATCTTA
ACGACCTCAAGATCCCCTTCCTGAGTGACCGCCCACCAGGCCTCAAGCCGATTGCTATTTTCTCCAAGCAGCTCGCCACC
CTGATTAATGCCGGGGTACCCTTAGTGCAGTCGCTCACTATTTTACAGCGTCAAATCGAACATAAGGGGCTGCAAAACGT
CGTCCGCAAAGTCCGCAATGACGTCGAAGCAGGCACGCCGCTGTCTGAAGCGATTGCCAAGTTTCCCAAAGTTTTCAATC
GCCTCTACATCAATTTGGTGCGTGCAGGCGAAACCAGCGGCACGCTCGACAGCGTATTGGAGAGAATCGCTGAATTTCAA
GAGAAAGATTTGGCAACTCGCGGGAAGATCAAGAGTGCCATGACCTATCCAGTAATTGTTTTAGTTTTTGCTCTCTTAAT
TACTTATTTTCTGCTCACTACCATTGTTCCGCAGTTCGGGGGAATGTTGACACAGCTTGGCGCAGAATTGCCTCTACTCA
CTCGGGTCTTGATGGCGATGTCTGACTTCTTGAAGACGAAGACCATTGTGATCGTTCTGATTGTTGCGGCCCTCGTTTTT
GCCTACCGCTATTATTACTCCACCAAAAAAGGTCGGCGTGTCGTCGATGATTTCAAATTAAAAATTCCTGTTTTCGGCAC
TTTGATACAGCGAAGCGCCATAGCGAGCTTCGCCCGTACCTTCGGCCTACTGATCAACAGCGGCGTCAATATCATTGAAA
GTTTGGAAATCACCAAAGGTACGGCTAATAACGCCATTGTCGAAGACACCATCGAAAATGCCAAAAACGTGGTGATGGTC
GGCGAACAGATGAGTGGCAGCCTAGCAGCCAGTCCAGTGTTTCCGCCGATGGTGGTGAGCATGGTGGCGATTGGCGAAGA
AACCGGCGCCCTCGACACTATGCTTGCTAAAGTCGCCGACTTTTATGACCGCGAAGTGGAAGAAGCTATTGAAGGTCTCA
CTGCAGCCATTGAGCCGATTATGATTGTCTTTCTCGGGGCCATCGTTGGGTTAATCGTGGCCGGGATGTTCCTGCCAATG
TTCAGCATTATCAGCGCACTGAGTAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
57.457 |
100 |
0.575 |
| pilC | Legionella pneumophila strain ERS1305867 |
36.098 |
100 |
0.362 |