Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   BVMH_RS01985 Genome accession   NZ_CP034176
Coordinates   393139..393258 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain MH25     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 388139..398258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVMH_RS01970 (BVMH_01970) - 389751..390434 (+) 684 WP_007410267.1 response regulator transcription factor -
  BVMH_RS01975 (BVMH_01975) - 390421..391854 (+) 1434 WP_162492834.1 HAMP domain-containing sensor histidine kinase -
  BVMH_RS01980 (BVMH_01980) rapC 392007..393155 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  BVMH_RS01985 (BVMH_01985) phrC 393139..393258 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BVMH_RS01990 (BVMH_01990) - 393407..393502 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  BVMH_RS01995 (BVMH_01995) - 393597..394961 (-) 1365 WP_124934871.1 aspartate kinase -
  BVMH_RS02000 (BVMH_02000) ceuB 395375..396328 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  BVMH_RS02005 (BVMH_02005) - 396318..397265 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  BVMH_RS02010 (BVMH_02010) - 397259..398017 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=329597 BVMH_RS01985 WP_003156334.1 393139..393258(+) (phrC) [Bacillus velezensis strain MH25]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=329597 BVMH_RS01985 WP_003156334.1 393139..393258(+) (phrC) [Bacillus velezensis strain MH25]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718

Multiple sequence alignment