Detailed information NTG0329596

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BVMH_RS01980
• Genome accession: NZ_CP034176
• Coordinates: 392007..393155 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain MH25
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 387007..398155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVMH_RS01960 (BVMH_01960)	-	387404..388087 (-)	684	WP_100001209.1	ABC transporter ATP-binding protein	-
BVMH_RS01965 (BVMH_01965)	-	388102..389538 (-)	1437	WP_076425710.1	ABC transporter permease	-
BVMH_RS01970 (BVMH_01970)	-	389751..390434 (+)	684	WP_007410267.1	response regulator transcription factor	-
BVMH_RS01975 (BVMH_01975)	-	390421..391854 (+)	1434	WP_162492834.1	HAMP domain-containing sensor histidine kinase	-
BVMH_RS01980 (BVMH_01980)	rapC	392007..393155 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
BVMH_RS01985 (BVMH_01985)	phrC	393139..393258 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
BVMH_RS01990 (BVMH_01990)	-	393407..393502 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
BVMH_RS01995 (BVMH_01995)	-	393597..394961 (-)	1365	WP_124934871.1	aspartate kinase	-
BVMH_RS02000 (BVMH_02000)	ceuB	395375..396328 (+)	954	WP_059366593.1	ABC transporter permease	Machinery gene
BVMH_RS02005 (BVMH_02005)	-	396318..397265 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
BVMH_RS02010 (BVMH_02010)	-	397259..398017 (+)	759	WP_012116804.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=329596 BVMH_RS01980 WP_007410270.1 392007..393155(+) (rapC) [Bacillus velezensis strain MH25]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=329596 BVMH_RS01980 WP_007410270.1 392007..393155(+) (rapC) [Bacillus velezensis strain MH25]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAATGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTATTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568