Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EH197_RS19130 Genome accession   NZ_CP034169
Coordinates   3756624..3758294 (-) Length   556 a.a.
NCBI ID   WP_137440070.1    Uniprot ID   -
Organism   Enterococcus avium strain 352     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3751624..3763294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH197_RS19100 (EH197_19105) - 3751739..3753928 (-) 2190 WP_070558415.1 penicillin-binding transpeptidase domain-containing protein -
  EH197_RS19105 (EH197_19110) ftsL 3753929..3754306 (-) 378 WP_137440068.1 cell division protein FtsL -
  EH197_RS19110 (EH197_19115) rsmH 3754312..3755265 (-) 954 WP_137440069.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  EH197_RS19115 (EH197_19120) mraZ 3755281..3755712 (-) 432 WP_016180546.1 division/cell wall cluster transcriptional repressor MraZ -
  EH197_RS19120 (EH197_19125) - 3755881..3756252 (-) 372 WP_016180545.1 DUF3397 domain-containing protein -
  EH197_RS19125 (EH197_19130) - 3756481..3756597 (+) 117 WP_010745911.1 DUF4044 domain-containing protein -
  EH197_RS19130 (EH197_19135) recN 3756624..3758294 (-) 1671 WP_137440070.1 DNA repair protein RecN Machinery gene
  EH197_RS19135 (EH197_19140) - 3758324..3758782 (-) 459 WP_016180542.1 arginine repressor -
  EH197_RS19140 (EH197_19145) - 3758798..3759613 (-) 816 WP_102872559.1 TlyA family RNA methyltransferase -
  EH197_RS19145 (EH197_19150) - 3759639..3760523 (-) 885 WP_102872558.1 polyprenyl synthetase family protein -
  EH197_RS19150 (EH197_19155) - 3760523..3760744 (-) 222 WP_016180539.1 exodeoxyribonuclease VII small subunit -
  EH197_RS19155 (EH197_19160) xseA 3760744..3762078 (-) 1335 WP_137440071.1 exodeoxyribonuclease VII large subunit -
  EH197_RS19160 (EH197_19165) - 3762094..3762951 (-) 858 WP_137440482.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62679.12 Da        Isoelectric Point: 4.6038

>NTDB_id=329542 EH197_RS19130 WP_137440070.1 3756624..3758294(-) (recN) [Enterococcus avium strain 352]
MLQELTIKNFAIISSLHLSFTDGMTALTGETGAGKSIIIDAVSLLAGARSSIEYIRQGSDKCLVEGLFDLPKQSDFQELM
EELGIEVDEAGLIVQRDLNSSGKSVSRVNGRIVTLANLRRIGQFLVDIQGQNDHQELMHPESHLRLLDSFGDPAFQEIKT
TYRIAYREYVTLAKQVKKFKQNEQSFVQRIDMLTFQQEEIGNAELTLGEEEKLMEERDKLTNYQKIVDSLSYSYQAMTNE
ETSSLDAIGSASQELQTIASLDKDYDNISDNVHSAYYLLQDAVSEIGRQLDLLELDEERLDLVNERLELIHQLKRKYGDS
IESILSYYERISQELLDSDFSGDKLEKLEKELAVKESKLLKLAEKLRTARQEMAKKLEAAIQTELKDLYMENARFEVRFK
ETGFSPEGIDEVEFFITTNPGEPLKPLVKVASGGEISRVMLALKTIFSKTQGLTSIVFDEVDTGVSGRVAQAIADKIYQI
GQNSQALCITHLPQVAAKADHQLFIRKEVVDGRTLTKVEELTEQDRTEEIARMLAGTEITDLTVKHAKELLQLAKK

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=329542 EH197_RS19130 WP_137440070.1 3756624..3758294(-) (recN) [Enterococcus avium strain 352]
ATGTTACAGGAATTGACAATTAAAAATTTTGCGATCATTTCTTCGTTACATTTGAGCTTCACTGATGGAATGACTGCGTT
AACAGGTGAAACTGGAGCCGGAAAATCGATCATAATTGATGCAGTGAGCTTACTGGCAGGAGCTCGCTCGTCGATTGAAT
ATATTCGCCAAGGCAGTGATAAATGTCTAGTCGAAGGACTTTTTGATTTACCAAAACAATCGGACTTTCAAGAATTGATG
GAAGAGCTTGGAATTGAGGTTGATGAGGCTGGATTGATTGTTCAGCGAGATTTGAATAGTTCAGGAAAAAGTGTGTCACG
TGTCAATGGCAGAATCGTAACTCTCGCAAATCTACGTAGAATCGGACAATTTCTAGTAGATATTCAAGGCCAAAATGACC
ATCAAGAACTGATGCATCCAGAATCCCATTTACGTCTTTTAGATAGTTTTGGTGATCCAGCATTTCAAGAAATTAAAACG
ACTTACCGAATCGCTTACCGAGAGTATGTTACCTTAGCCAAACAGGTTAAGAAATTTAAGCAAAACGAGCAGTCCTTTGT
TCAACGGATTGATATGTTGACCTTCCAGCAAGAAGAAATCGGTAACGCTGAACTAACTCTGGGCGAGGAAGAAAAGCTGA
TGGAAGAACGTGACAAACTCACCAATTATCAAAAAATCGTTGACAGCCTTTCCTATAGCTATCAAGCTATGACGAATGAG
GAGACAAGTTCCCTTGACGCTATTGGGTCAGCTAGTCAAGAATTGCAAACAATTGCCTCTCTAGATAAAGATTATGATAA
CATTTCTGATAATGTGCATAGCGCATACTATCTTTTGCAAGACGCTGTTAGCGAAATTGGTCGCCAACTGGATCTGTTAG
AGCTTGATGAAGAACGTTTAGATTTGGTTAATGAGCGACTGGAATTGATTCATCAATTGAAACGCAAATATGGTGATTCG
ATCGAAAGCATTTTGAGCTATTACGAGCGAATAAGCCAAGAGCTTCTAGATTCAGATTTTTCTGGAGATAAATTGGAAAA
ACTAGAAAAGGAATTAGCAGTTAAAGAAAGTAAATTGCTAAAATTAGCGGAAAAGCTGCGAACAGCTCGACAGGAAATGG
CGAAGAAACTGGAAGCGGCTATTCAAACTGAGTTGAAGGATCTTTATATGGAGAATGCCCGTTTTGAAGTACGTTTTAAA
GAAACAGGATTTAGTCCTGAAGGCATTGATGAAGTAGAATTCTTTATTACGACGAATCCTGGTGAACCATTGAAGCCGTT
AGTTAAAGTGGCATCGGGTGGAGAAATCTCACGCGTCATGTTGGCGTTGAAGACGATTTTCTCAAAAACACAAGGGTTGA
CCAGTATTGTGTTTGATGAAGTAGACACGGGGGTCAGTGGTAGAGTGGCTCAGGCGATCGCAGACAAGATTTATCAAATC
GGACAAAATTCTCAAGCGCTTTGTATCACCCATTTGCCTCAAGTAGCTGCTAAAGCTGATCATCAGCTGTTTATTCGCAA
AGAAGTAGTAGATGGGCGAACATTGACTAAAGTGGAGGAGCTAACTGAGCAAGACCGTACAGAAGAAATCGCCCGTATGT
TAGCAGGAACTGAAATTACGGATTTAACTGTTAAACATGCAAAGGAACTATTACAGTTAGCAAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.772

100

0.5

Multiple sequence alignment