Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   SUB_RS09285 Genome accession   NC_012004
Coordinates   1851342..1852118 (+) Length   258 a.a.
NCBI ID   WP_015912154.1    Uniprot ID   B9DWF5
Organism   Streptococcus uberis 0140J     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1846342..1857118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS09275 (SUB1867) rlmH 1849397..1849876 (-) 480 WP_015912152.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SUB_RS09280 (SUB1868) htrA 1850062..1851264 (+) 1203 WP_015912153.1 S1C family serine protease Regulator
  SUB_RS09285 (SUB1869) spo0J 1851342..1852118 (+) 777 WP_015912154.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 258 a.a.        Molecular weight: 29575.10 Da        Isoelectric Point: 9.8609

>NTDB_id=32951 SUB_RS09285 WP_015912154.1 1851342..1852118(+) (spo0J) [Streptococcus uberis 0140J]
MSENFKIIKIEDIVANPYQPRIHFNEKDLEELANSIKVNGLIQPIIVRQSEVFGYELIAGERRLKASKLAGLNEIPAVIK
KISNSESMHQAIVENLQRSDLNPIEEARAFQNIIEKNNITHEHLAKYMGKSRPYISNSIRLLQLPEIILKAIEENKISSG
HARALLALDDSHLQEKYFKQIIKQHLNVRQTESLIKSSKKGHTLKREEKNIFIKAIEEELAKTLGITVQLSQKKDGSGTL
QFHYQNTEELNRVINKLK

Nucleotide


Download         Length: 777 bp        

>NTDB_id=32951 SUB_RS09285 WP_015912154.1 1851342..1852118(+) (spo0J) [Streptococcus uberis 0140J]
ATGTCAGAAAATTTCAAAATAATAAAGATTGAGGATATTGTAGCTAATCCCTACCAACCTCGGATTCATTTTAATGAAAA
AGATCTAGAAGAATTAGCTAACTCAATCAAAGTCAATGGACTTATTCAACCCATTATTGTGCGTCAATCAGAGGTCTTTG
GTTATGAATTAATTGCTGGAGAAAGAAGATTGAAGGCTTCCAAATTAGCAGGTTTAAATGAGATTCCAGCAGTCATTAAA
AAAATTTCAAATAGCGAAAGTATGCATCAGGCAATTGTTGAAAATCTGCAACGATCTGACTTAAATCCAATTGAAGAAGC
AAGAGCTTTTCAAAATATTATTGAAAAAAATAACATTACTCACGAGCATTTGGCTAAGTATATGGGAAAATCTAGACCGT
ATATTTCAAATAGCATACGTTTGCTTCAATTACCAGAAATTATTCTAAAGGCTATTGAAGAAAATAAAATTAGTTCAGGA
CATGCACGCGCTTTACTTGCTCTAGATGATTCCCACTTGCAAGAAAAATATTTTAAACAAATCATAAAACAACATCTCAA
TGTTAGACAGACAGAATCCTTAATCAAATCAAGCAAAAAAGGTCATACATTAAAAAGAGAAGAAAAGAATATCTTTATAA
AAGCTATTGAAGAAGAACTTGCAAAAACACTAGGAATTACTGTTCAATTATCTCAAAAAAAAGATGGAAGTGGTACACTT
CAATTTCATTATCAAAATACCGAAGAACTCAACAGAGTTATCAACAAACTCAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB B9DWF5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.253

99.612

0.55


Multiple sequence alignment