Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SUB_RS08835 Genome accession   NC_012004
Coordinates   1764211..1765350 (-) Length   379 a.a.
NCBI ID   WP_015912068.1    Uniprot ID   A0A2X4HFH4
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759211..1770350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS08810 (SUB1773) - 1760662..1762224 (-) 1563 WP_015912064.1 membrane protein -
  SUB_RS08815 (SUB1774) - 1762380..1762685 (-) 306 WP_015912065.1 DUF1292 domain-containing protein -
  SUB_RS08820 (SUB1775) ruvX 1762696..1763115 (-) 420 WP_015912066.1 Holliday junction resolvase RuvX -
  SUB_RS08825 (SUB1776) - 1763112..1763381 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  SUB_RS08830 (SUB1777) spx 1763497..1763895 (-) 399 WP_015912067.1 transcriptional regulator Spx -
  SUB_RS08835 (SUB1778) recA 1764211..1765350 (-) 1140 WP_015912068.1 recombinase RecA Machinery gene
  SUB_RS08840 (SUB1779) cinA 1765432..1766703 (-) 1272 WP_015912069.1 competence/damage-inducible protein A Machinery gene
  SUB_RS08845 (SUB1780) - 1766794..1767348 (-) 555 WP_015912070.1 DNA-3-methyladenine glycosylase I -
  SUB_RS08850 (SUB1781) ruvA 1767353..1767946 (-) 594 WP_015912071.1 Holliday junction branch migration protein RuvA -
  SUB_RS08855 (SUB1782) - 1767948..1769171 (-) 1224 WP_015912072.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40830.46 Da        Isoelectric Point: 4.7828

>NTDB_id=32948 SUB_RS08835 WP_015912068.1 1764211..1765350(-) (recA) [Streptococcus uberis 0140J]
MAKKVKKTDDISKKFGEDRRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDVIQKAGAWFSYNGEKIGQGSE
NAKKFLADHPEIFDEIDHKVRVKVGLLEDEVLDNNQETVELPETDEFILDLDDAIEIED

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=32948 SUB_RS08835 WP_015912068.1 1764211..1765350(-) (recA) [Streptococcus uberis 0140J]
TTGGCAAAAAAAGTGAAAAAAACAGATGACATTTCAAAAAAATTTGGTGAAGATCGTCGCAAGGCCCTAGACGATGCCTT
AAAAAATATCGAGAAAGACTTTGGTAAAGGGGCTGTTATGCGCCTAGGCGAGCGTGCGGAACAAAAAGTTCAAGTCATGA
GTTCTGGAAGTTTGGCCCTAGACATCGCTTTGGGTGCAGGTGGTTATCCAAAGGGACGTATTATTGAGATTTATGGACCA
GAGTCTTCTGGTAAGACAACTGTAGCTTTACATGCTGTTGCTCAGGCTCAAAAAGAGGGTGGAATTGCAGCATTTATTGA
TGCGGAACATGCTTTAGACCCAGCCTATGCAGCTGCATTAGGAGTTAATATTGATGAATTGCTTTTATCTCAACCAGATT
CTGGAGAACAAGGTTTGGAGATTGCAGGGAAATTGATTGACTCAGGCGCAGTTGATTTAGTGGTTATCGACTCTGTTGCG
GCTCTTGTTCCTCGTGCGGAAATAGATGGTGATATTGGTGACAGTCATGTAGGCTTACAGGCTCGAATGATGAGTCAAGC
GATGCGTAAATTGTCAGCGTCCATCAATAAAACTAAAACAATTGCAATCTTTATCAATCAATTGCGTGAAAAAGTAGGTG
TTATGTTTGGAAATCCAGAAACAACACCTGGTGGTCGTGCTCTTAAATTCTATGCTTCCGTTCGATTAGATGTTCGTGGA
AATACACAAATTAAGGGAACTGGTGATCAAAAAGATAGCAGTATTGGTAAAGAGACTAAAATTAAGGTTGTTAAAAATAA
AGTTGCACCACCGTTTAAAGTTGCTGAAGTTGAAATTATGTATGGAGAAGGTATCTCTCGTACAGGTGAATTGATTAAAA
TCGCGTCAGACCTAGACGTAATTCAAAAAGCAGGTGCATGGTTCTCCTATAATGGTGAGAAAATCGGTCAAGGTTCTGAG
AATGCTAAGAAATTCTTAGCAGATCATCCTGAGATTTTTGACGAAATTGACCATAAGGTTCGTGTAAAAGTTGGTTTATT
AGAAGATGAAGTGCTTGATAATAACCAAGAAACAGTTGAACTACCTGAAACAGATGAGTTTATCTTAGACTTAGATGATG
CCATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4HFH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

90.501

100

0.905
  recA Streptococcus mutans UA159

87.24

100

0.884
  recA Streptococcus pneumoniae R6

84.416

100

0.858
  recA Streptococcus pneumoniae Rx1

84.416

100

0.858
  recA Streptococcus pneumoniae D39

84.416

100

0.858
  recA Streptococcus pneumoniae TIGR4

84.416

100

0.858
  recA Streptococcus mitis NCTC 12261

85.302

100

0.858
  recA Streptococcus mitis SK321

84.777

100

0.852
  recA Lactococcus lactis subsp. cremoris KW2

78.736

91.821

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

69.697

87.071

0.607
  recA Bacillus subtilis subsp. subtilis str. 168

67.751

89.182

0.604
  recA Glaesserella parasuis strain SC1401

57.459

95.515

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.048

87.599

0.544
  recA Neisseria gonorrhoeae strain FA1090

61.631

87.335

0.538
  recA Neisseria gonorrhoeae MS11

61.631

87.335

0.538
  recA Neisseria gonorrhoeae MS11

61.631

87.335

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

85.752

0.528
  recA Vibrio cholerae strain A1552

61.538

85.752

0.528
  recA Acinetobacter baumannii D1279779

60.923

85.752

0.522
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

85.488

0.522
  recA Acinetobacter baylyi ADP1

60.615

85.752

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

87.335

0.517
  recA Helicobacter pylori strain NCTC11637

56.322

91.821

0.517
  recA Helicobacter pylori 26695

56.322

91.821

0.517
  recA Pseudomonas stutzeri DSM 10701

58.841

86.544

0.509
  recA Ralstonia pseudosolanacearum GMI1000

60.252

83.641

0.504

Multiple sequence alignment