Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CCS91_RS09255 Genome accession   NZ_CP034162
Coordinates   1802907..1803554 (-) Length   215 a.a.
NCBI ID   WP_124866244.1    Uniprot ID   -
Organism   Escherichia albertii strain 06-3542     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797907..1808554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCS91_RS09240 helD 1798149..1800203 (-) 2055 WP_124866729.1 DNA helicase IV -
  CCS91_RS09245 - 1800326..1800772 (+) 447 WP_001261228.1 YccF domain-containing protein -
  CCS91_RS09250 yccS 1800782..1802947 (+) 2166 WP_072243494.1 YccS family putative transporter -
  CCS91_RS09255 sxy/tfoX 1802907..1803554 (-) 648 WP_124866244.1 TfoX/Sxy family DNA transformation protein Regulator
  CCS91_RS09260 sulA 1803772..1804281 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  CCS91_RS09265 ompA 1804637..1805689 (+) 1053 WP_024164823.1 porin OmpA -
  CCS91_RS09270 matP 1805764..1806216 (-) 453 WP_059219816.1 macrodomain Ter protein MatP -
  CCS91_RS09275 - 1806402..1808162 (+) 1761 WP_124866245.1 AAA family ATPase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25057.26 Da        Isoelectric Point: 9.3814

>NTDB_id=329472 CCS91_RS09255 WP_124866244.1 1802907..1803554(-) (sxy/tfoX) [Escherichia albertii strain 06-3542]
MKKLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPKLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWL
RLRQHNSQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=329472 CCS91_RS09255 WP_124866244.1 1802907..1803554(-) (sxy/tfoX) [Escherichia albertii strain 06-3542]
ATGAAAAAGCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAATGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAAACTGAAAGATTTGCCGAATATGTCTTATC
ACCTGGAGGCGATTCTCGGTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTG
CGACTACGTCAGCATAATAGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGC
AGCGCTCCCGGTAGCACGCCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAAC
CTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(124-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

86.977

100

0.87

Multiple sequence alignment