Detailed information NTG0032944

Bioinformatically predicted

Overview

• Name: oppD
• Type: Regulator
• Locus tag: SUB_RS08090
• Genome accession: NC_012004
• Coordinates: 1602270..1603316 (-)
• Length: 348 a.a.
• NCBI ID: WP_015911921.1
• Uniprot ID: -
• Organism: Streptococcus uberis 0140J
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1597270..1608316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SUB_RS08065 (SUB1617)	rimI	1597917..1598342 (-)	426	WP_015911916.1	ribosomal protein S18-alanine N-acetyltransferase	-
SUB_RS08070 (SUB1618)	tsaB	1598350..1599042 (-)	693	WP_015911917.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SUB_RS08075 (SUB1619)	-	1599323..1599553 (+)	231	WP_015911918.1	DNA-dependent RNA polymerase subunit epsilon	-
SUB_RS08080 (SUB1620)	rnjA	1599555..1601237 (+)	1683	WP_015911919.1	ribonuclease J1	-
SUB_RS08085 (SUB1621)	amiF	1601335..1602270 (-)	936	WP_015911920.1	ABC transporter ATP-binding protein	Regulator
SUB_RS08090 (SUB1622)	oppD	1602270..1603316 (-)	1047	WP_015911921.1	ABC transporter ATP-binding protein	Regulator
SUB_RS08095 (SUB1623)	-	1603328..1604359 (-)	1032	WP_015911922.1	ABC transporter permease	-
SUB_RS08100 (SUB1624)	-	1604369..1605283 (-)	915	WP_015911923.1	ABC transporter permease	-
SUB_RS08105 (SUB1625)	-	1605358..1607016 (-)	1659	WP_015911924.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38504.09 Da
• Isoelectric Point: 5.1474

>NTDB_id=32944 SUB_RS08090 WP_015911921.1 1602270..1603316(-) (oppD) [Streptococcus uberis 0140J]
MSKETILSVNNLHVDFKTYAGDVKAIRDINFELKKGETLAIVGESGSGKSVTTRTLMGLNAKNATISGDIDFKGRKLNEL
KEQDWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHEKVSKADALSRALELMKQVGIPDAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQNQILKLMKELQSQISSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAARNEYALDIDHEEEPPMFKVSETHYAATWLL
DERAPKVTPPLPIQKRWAKWAEKERGQA

Nucleotide

• Length: 1047 bp

>NTDB_id=32944 SUB_RS08090 WP_015911921.1 1602270..1603316(-) (oppD) [Streptococcus uberis 0140J]
ATGTCAAAAGAAACAATTTTGAGTGTTAACAACCTCCATGTCGATTTTAAAACTTATGCTGGAGATGTTAAAGCTATTCG
CGATATTAACTTTGAGTTAAAAAAAGGTGAAACGCTTGCTATCGTTGGTGAATCAGGTTCTGGGAAATCTGTAACAACGA
GAACCTTAATGGGATTAAATGCAAAAAATGCCACTATATCAGGTGACATTGATTTCAAAGGGAGAAAGCTCAATGAGCTT
AAAGAACAAGATTGGGTTAAAGTTCGTGGTAAAGAAATTGCGATGATTTTCCAAGACCCAATGACCAGTTTAGACCCAAC
AATGAAAATTGGCATGCAAATTGCAGAAGCTATCTTGATTCACGAAAAAGTATCTAAAGCTGACGCATTATCACGTGCAT
TAGAATTGATGAAACAAGTTGGCATTCCAGATGCTGAAGAACATATTAATGATTATCCACATCAATGGTCTGGTGGTATG
AGACAACGTGCGGTAATTGCCATTGCTCTTGCAGCTAATCCTGAAATTCTCATCGCAGATGAGCCAACAACAGCCTTGGA
TGTAACCATTCAAAATCAAATTTTAAAATTGATGAAAGAATTACAGTCACAAATTTCATCTTCTATTATTTTCATCACCC
ATGATCTTGGTGTGGTAGCTGGTATGGCTGATCGTGTAGCGGTAATGTATGCTGGGAAAATTGTTGAGTATGGAACTGTA
GATGAAGTATTCTATAATCCACAACACCCATATACATGGGGATTATTGAATTCCATGCCAACGACTGATACAGAAGCAGG
AAGCTTGCAATCTATTCCAGGAACACCTCCTGACTTATTGAATCCTCCAAAAGGAGATGCATTTGCAGCTCGTAATGAAT
ACGCTCTTGATATTGATCATGAAGAAGAGCCACCAATGTTTAAAGTCAGTGAAACACACTATGCTGCAACATGGTTATTG
GATGAACGTGCTCCTAAGGTAACACCTCCTCTTCCAATCCAAAAACGTTGGGCAAAATGGGCTGAAAAAGAAAGGGGACA
AGCTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (235-297)

• ABC transporter (ABC_tran) (27-183)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
oppD	Streptococcus mutans UA159	80.588	97.701	0.787
amiE	Streptococcus salivarius strain HSISS4	57.015	96.264	0.549
amiE	Streptococcus thermophilus LMG 18311	56.418	96.264	0.543
amiE	Streptococcus thermophilus LMD-9	56.418	96.264	0.543