Detailed information NTG0032943

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SUB_RS08085
• Genome accession: NC_012004
• Coordinates: 1601335..1602270 (-)
• Length: 311 a.a.
• NCBI ID: WP_015911920.1
• Uniprot ID: -
• Organism: Streptococcus uberis 0140J
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1596335..1607270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SUB_RS08055 (SUB1615)	rpsN	1596531..1596800 (+)	270	WP_015911914.1	30S ribosomal protein S14	-
SUB_RS08060 (SUB1616)	tsaD	1596914..1597927 (-)	1014	WP_015911915.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
SUB_RS08065 (SUB1617)	rimI	1597917..1598342 (-)	426	WP_015911916.1	ribosomal protein S18-alanine N-acetyltransferase	-
SUB_RS08070 (SUB1618)	tsaB	1598350..1599042 (-)	693	WP_015911917.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SUB_RS08075 (SUB1619)	-	1599323..1599553 (+)	231	WP_015911918.1	DNA-dependent RNA polymerase subunit epsilon	-
SUB_RS08080 (SUB1620)	rnjA	1599555..1601237 (+)	1683	WP_015911919.1	ribonuclease J1	-
SUB_RS08085 (SUB1621)	amiF	1601335..1602270 (-)	936	WP_015911920.1	ABC transporter ATP-binding protein	Regulator
SUB_RS08090 (SUB1622)	oppD	1602270..1603316 (-)	1047	WP_015911921.1	ABC transporter ATP-binding protein	Regulator
SUB_RS08095 (SUB1623)	-	1603328..1604359 (-)	1032	WP_015911922.1	ABC transporter permease	-
SUB_RS08100 (SUB1624)	-	1604369..1605283 (-)	915	WP_015911923.1	ABC transporter permease	-
SUB_RS08105 (SUB1625)	-	1605358..1607016 (-)	1659	WP_015911924.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35253.09 Da
• Isoelectric Point: 6.1900

>NTDB_id=32943 SUB_RS08085 WP_015911920.1 1601335..1602270(-) (amiF) [Streptococcus uberis 0140J]
MTENRKKLVELKNVSLIFNKGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGEKVSHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTKTKQEREDRVQELLEHVGLNRDHVTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQEDRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTRSLLSAIPEPDPDIERQRVAEIYDPSAEDDGQEREMREITPGHFVLSTEAEAAEYKAKCQK

Nucleotide

• Length: 936 bp

>NTDB_id=32943 SUB_RS08085 WP_015911920.1 1601335..1602270(-) (amiF) [Streptococcus uberis 0140J]
ATGACTGAAAATCGTAAAAAATTAGTTGAGCTCAAAAATGTCTCTCTAATCTTTAACAAAGGCAAAAAAAATGAAGTGAA
AGCCATTAATAATGTTAGCTTTGACATTTATGAAGGCGAAGTATTTGGACTGGTTGGTGAATCAGGTTCAGGTAAAACAA
CTGTTGGACGTGCGATATTAAAACTTTATGATATCAATGAGGGTGAAATTATTTTCAATGGTGAAAAAGTTTCTCATCTC
AAAGGTAAAGAATTACATGAGTTCAGAAAGAATGCTCAAATGATTTTCCAAGATCCTCAAGCAAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCTGAAGGACTTGATATCCATGGCCTAACCAAAACGAAACAAGAGCGTGAAGATAGGGTTC
AAGAATTGTTAGAGCATGTTGGACTTAATAGAGACCACGTGACACGCTATCCACACGAATTCTCTGGAGGACAACGTCAA
CGTATTGGCATTGCTCGTGCCCTTGCCGTTCAACCTAAGTTTATCATCGCTGATGAACCAATTTCAGCACTGGATGTATC
CATTCAGGCACAGGTTGTTAACCTCATGCAAAAATTACAAGAAGATAGAGGTTTGACCTATCTCTTTATCGCCCACGATT
TGTCAATGGTTAAATACATTTCTGACCGAATTGGGGTTATGCATTGGGGCAAAATGCTAGAAATTGGAACATCTGATGAT
GTTTACAATAACCCAATCCATCCTTATACAAGAAGTTTGCTTTCAGCAATTCCAGAGCCAGATCCAGACATTGAGCGTCA
GCGTGTCGCAGAAATCTATGACCCAAGTGCTGAGGATGATGGACAAGAAAGAGAAATGCGTGAAATTACACCAGGACACT
TTGTTCTATCAACAGAAGCAGAAGCTGCTGAATACAAAGCAAAATGCCAAAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.896	99.035	0.534