Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SUB_RS07390 Genome accession   NC_012004
Coordinates   1469019..1469744 (-) Length   241 a.a.
NCBI ID   WP_015911786.1    Uniprot ID   B9DVC5
Organism   Streptococcus uberis 0140J     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1464019..1474744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS07355 (SUB1468) rnpM 1464220..1464516 (-) 297 WP_015911780.1 RNase P modulator RnpM -
  SUB_RS07360 (SUB1469) nusA 1464532..1465680 (-) 1149 WP_015911781.1 transcription termination factor NusA -
  SUB_RS07365 (SUB1470) rimP 1465736..1466218 (-) 483 WP_080502310.1 ribosome maturation factor RimP -
  SUB_RS07375 (SUB1471) trmB 1466496..1467131 (-) 636 WP_015911783.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SUB_RS07380 (SUB1472) ccrZ 1467131..1467922 (-) 792 WP_015911784.1 cell cycle regulator CcrZ -
  SUB_RS07385 (SUB1473) - 1467983..1469017 (-) 1035 WP_015911785.1 ABC transporter permease -
  SUB_RS07390 (SUB1474) pptA 1469019..1469744 (-) 726 WP_015911786.1 ABC transporter ATP-binding protein Regulator
  SUB_RS07395 (SUB1475) - 1470020..1470439 (+) 420 WP_015911787.1 HIT family protein -
  SUB_RS07400 (SUB1476) - 1470436..1470741 (+) 306 WP_015911788.1 hypothetical protein -
  SUB_RS07405 (SUB1477) brpA 1470769..1472085 (-) 1317 WP_015911789.1 biofilm formation/cell division transcriptional regulator BrpA -
  SUB_RS07410 (SUB1478) - 1472094..1472606 (-) 513 WP_041817807.1 GNAT family N-acetyltransferase -
  SUB_RS07415 (SUB1479) tsaE 1472608..1473051 (-) 444 WP_015911791.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SUB_RS07420 (SUB1480) - 1473144..1474604 (-) 1461 WP_015911792.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26977.46 Da        Isoelectric Point: 4.9159

>NTDB_id=32939 SUB_RS07390 WP_015911786.1 1469019..1469744(-) (pptA) [Streptococcus uberis 0140J]
MLKIENLTGGYLNIPVLKNISFTIEDGELVGLIGLNGAGKSTTIKEIIGLLKPYNGEITIDGLSIEQDNQNYRKKIGFIP
ETPSLYEELTLKEHIEITAMAYDIPVEKALQRAESLLETYRLSDKLDWFPSLFSKGMKQKVMIICAFIIDPSLFILDEPF
LGLDPLAIADLVSHLEEEKKKGKSILMSTHVLDSAEKMCDRFIILHKGQIKAQGTLEELRKSFGQSGASLNDIYLMLTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=32939 SUB_RS07390 WP_015911786.1 1469019..1469744(-) (pptA) [Streptococcus uberis 0140J]
ATGCTAAAAATTGAAAATCTTACAGGCGGTTACCTTAATATTCCAGTGTTAAAAAATATTTCTTTTACAATAGAAGATGG
AGAACTAGTTGGCCTAATTGGTTTAAATGGTGCCGGGAAATCAACAACCATTAAAGAAATCATTGGCTTATTAAAACCTT
ATAATGGGGAAATAACAATTGATGGCCTTAGTATAGAACAAGATAATCAAAACTATAGGAAAAAAATTGGTTTTATTCCC
GAAACGCCAAGTTTATATGAGGAATTAACTCTTAAAGAACATATTGAAATTACAGCAATGGCCTATGATATCCCTGTTGA
GAAGGCCTTACAAAGAGCTGAAAGTTTATTAGAAACGTATCGCCTTTCGGATAAATTGGATTGGTTTCCAAGCCTGTTTT
CTAAAGGGATGAAACAAAAAGTGATGATTATTTGTGCCTTCATTATTGATCCTAGTCTCTTTATATTAGATGAACCCTTT
TTAGGACTAGATCCTTTAGCTATTGCAGATTTGGTTTCACATTTAGAAGAAGAAAAAAAGAAGGGCAAGTCCATTTTAAT
GAGTACTCATGTTTTAGATTCTGCTGAAAAAATGTGTGACCGTTTCATTATTCTTCACAAGGGACAGATTAAAGCTCAAG
GAACACTTGAAGAGCTAAGAAAAAGCTTTGGACAGTCAGGTGCTAGCTTAAATGATATCTACCTAATGTTAACAAAAGAG
GTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DVC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

72.385

99.17

0.718
  pptA Streptococcus salivarius strain HSISS4

72.385

99.17

0.718

Multiple sequence alignment