Detailed information NTG0329232

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: FPT06_RS05340
• Genome accession: NZ_CP041994
• Coordinates: 1048354..1049448 (-)
• Length: 364 a.a.
• NCBI ID: WP_002936177.1
• Uniprot ID: -
• Organism: Streptococcus suis strain INT-01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1043354..1054448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FPT06_RS05320 (FPT06_05320)	trpS	1043723..1044748 (+)	1026	WP_013730696.1	tryptophan--tRNA ligase	-
FPT06_RS05325 (FPT06_05325)	guaB	1044980..1046461 (+)	1482	WP_014637236.1	IMP dehydrogenase	-
FPT06_RS05330 (FPT06_05330)	-	1046712..1047914 (+)	1203	WP_002935295.1	IS110-like element ISSsu7 family transposase	-
FPT06_RS05340 (FPT06_05340)	recF	1048354..1049448 (-)	1095	WP_002936177.1	DNA replication/repair protein RecF	Machinery gene
FPT06_RS05345 (FPT06_05345)	yaaA	1049451..1049834 (-)	384	WP_002936175.1	S4 domain-containing protein YaaA	-
FPT06_RS05350 (FPT06_05350)	-	1049972..1051144 (-)	1173	WP_013730693.1	site-specific integrase	-
FPT06_RS05355 (FPT06_05355)	-	1051309..1052139 (-)	831	WP_013730692.1	KilA-N domain-containing protein	-
FPT06_RS05360 (FPT06_05360)	-	1052503..1053216 (-)	714	WP_013730691.1	helix-turn-helix domain-containing protein	-
FPT06_RS05365 (FPT06_05365)	-	1053370..1053597 (+)	228	WP_013730690.1	helix-turn-helix domain-containing protein	-
FPT06_RS05370 (FPT06_05370)	-	1053616..1054362 (+)	747	WP_013730689.1	Bro-N domain-containing protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42217.34 Da
• Isoelectric Point: 7.2235

>NTDB_id=329232 FPT06_RS05340 WP_002936177.1 1048354..1049448(-) (recF) [Streptococcus suis strain INT-01]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=329232 FPT06_RS05340 WP_002936177.1 1048354..1049448(-) (recF) [Streptococcus suis strain INT-01]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.083	99.176	0.695
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442