Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EH163_RS07570 Genome accession   NZ_CP034115
Coordinates   1506538..1506933 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain CDC121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1501538..1511933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH163_RS07545 - 1502957..1503361 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  EH163_RS07550 - 1503510..1503743 (+) 234 WP_002456242.1 DUF1146 family protein -
  EH163_RS07555 murA 1503853..1505118 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EH163_RS07560 fabZ 1505152..1505589 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EH163_RS07565 - 1505907..1506347 (-) 441 WP_001829935.1 YwpF-like family protein -
  EH163_RS07570 ssb 1506538..1506933 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  EH163_RS07575 - 1507321..1507980 (+) 660 WP_001829904.1 transglycosylase family protein -
  EH163_RS07580 tenA 1508264..1508953 (+) 690 WP_001829894.1 thiaminase II -
  EH163_RS07585 thiD 1508946..1509767 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EH163_RS07590 thiM 1509760..1510548 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  EH163_RS07595 thiE 1510554..1511192 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=329153 EH163_RS07570 WP_002457121.1 1506538..1506933(+) (ssb) [Staphylococcus epidermidis strain CDC121]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=329153 EH163_RS07570 WP_002457121.1 1506538..1506933(+) (ssb) [Staphylococcus epidermidis strain CDC121]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733

Multiple sequence alignment