Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EH162_RS07380 Genome accession   NZ_CP034111
Coordinates   1466865..1467260 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain CDC120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1461865..1472260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EH162_RS07355 - 1463284..1463688 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  EH162_RS07360 - 1463837..1464070 (+) 234 WP_002456242.1 DUF1146 family protein -
  EH162_RS07365 murA 1464180..1465445 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EH162_RS07370 fabZ 1465479..1465916 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EH162_RS07375 - 1466234..1466674 (-) 441 WP_001829935.1 YwpF-like family protein -
  EH162_RS07380 ssb 1466865..1467260 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  EH162_RS07385 - 1467648..1468307 (+) 660 WP_001829904.1 transglycosylase family protein -
  EH162_RS07390 tenA 1468591..1469280 (+) 690 WP_001829894.1 thiaminase II -
  EH162_RS07395 thiD 1469273..1470094 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EH162_RS07400 thiM 1470087..1470875 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  EH162_RS07405 thiE 1470881..1471519 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=329117 EH162_RS07380 WP_002457121.1 1466865..1467260(+) (ssb) [Staphylococcus epidermidis strain CDC120]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=329117 EH162_RS07380 WP_002457121.1 1466865..1467260(+) (ssb) [Staphylococcus epidermidis strain CDC120]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733

Multiple sequence alignment