Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   EIA51_RS06935 Genome accession   NZ_CP034110
Coordinates   1457872..1460331 (-) Length   819 a.a.
NCBI ID   WP_035686013.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain FARPER-174     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452872..1465331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIA51_RS06915 (EIA51_06915) kdsB 1453755..1454537 (-) 783 WP_035685736.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EIA51_RS06920 (EIA51_06920) - 1454534..1454716 (-) 183 WP_035685738.1 Trm112 family protein -
  EIA51_RS06925 (EIA51_06925) lpxK 1454879..1455889 (-) 1011 WP_035685740.1 tetraacyldisaccharide 4'-kinase -
  EIA51_RS06930 (EIA51_06930) msbA 1455905..1457653 (-) 1749 WP_035685742.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  EIA51_RS06935 (EIA51_06935) rec2 1457872..1460331 (-) 2460 WP_035686013.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EIA51_RS06940 (EIA51_06940) thiM 1460821..1461624 (+) 804 WP_035685744.1 hydroxyethylthiazole kinase -
  EIA51_RS06945 (EIA51_06945) thiD 1461636..1462454 (+) 819 WP_035685746.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EIA51_RS06950 (EIA51_06950) thiE 1462447..1463109 (+) 663 WP_035685748.1 thiamine phosphate synthase -
  EIA51_RS06955 (EIA51_06955) - 1463110..1464330 (+) 1221 WP_035685750.1 NRAMP family divalent metal transporter -

Sequence

Protein


Download         Length: 819 a.a.        Molecular weight: 92136.57 Da        Isoelectric Point: 9.8243

>NTDB_id=329088 EIA51_RS06935 WP_035686013.1 1457872..1460331(-) (rec2) [Avibacterium paragallinarum strain FARPER-174]
MGLRLDTLLWLVIAAGLTLLFVPQSFLLEPKQSAWLAGITVVGCGVAYWIKRQGLAKFFAYGAIFVLCLADFHYQAQQLL
QQAHAVAGLEKRIEREIRIVEVLHQQDYQTLIATAQLDETLPEQRLYVQWQRAEKVAVGQRWRAELSLRPLSSRLNEGGF
DRQKWYFSKGITAYARVKSAVKISEDFSWREARLQTAFQHTQALSMQGLLLALGFGERAWLQPTHWQIYQKTNTAHLIAI
SGLHIGLAMLLGVGIARGIQFCLPTYWITPMFPLFIGAIIALIYAYLAGFSIPTLRALVALGLVCLVRGLRFYHTPWQYF
QRVVAVLIFCQPLMVLSVSFWLSVGAVASLILWYQYVPLDLFQPRTDLVRQDRPFSLGAIIGKLILRWCVALLHLQLGLL
LVFTPVQLYFFHGFSLAGMIANVFAVPLFSFFLVPLVLFAVLSNGTFSSWQGANELAEKITVFLSNWQHKWIDLSQTQSQ
WIGLGLCALGLSYVFGLWQVQKNHSLNRQKSIPFVQDRTLAKWKWRLNPDKIPSVLCLKKLGVVLVLIFLVNGGNLLVTH
FRQPDWRLETLDVGQGLATLIVKNQRGILYDTGAAWRGGSMAELEILPYLRRQGIVLDYLILSHDDNDHAGGAEAVLRAY
PNATLITSSEKIERKTHRTSCFAGTQWQWQGLQISALSPQKVVKRAENNDSCVLLIDDGRHKVLLTGDAESQIEPQFIYK
AGKIDVLQVGHHGSKTSTSEALVKTLQPSIALISSGRGNPWHFPHYAVLARLQAQQSAVLNTADFGQILLSFSAKKPPPE
NISIDTARGTFSPWYRELL

Nucleotide


Download         Length: 2460 bp        

>NTDB_id=329088 EIA51_RS06935 WP_035686013.1 1457872..1460331(-) (rec2) [Avibacterium paragallinarum strain FARPER-174]
ATTGGCCTGAGGCTCGATACCCTGTTATGGCTTGTGATCGCCGCGGGCTTAACCTTGCTTTTTGTGCCGCAATCTTTTTT
GCTTGAGCCAAAGCAAAGTGCGTGGCTGGCGGGGATTACGGTGGTGGGCTGTGGCGTTGCCTATTGGATTAAGCGTCAAG
GACTAGCGAAATTTTTCGCCTATGGTGCGATATTTGTGCTATGCCTTGCGGATTTTCATTATCAGGCACAGCAGCTCTTA
CAGCAGGCTCACGCCGTTGCGGGGCTTGAAAAACGCATTGAGCGGGAAATTCGCATTGTCGAAGTACTACATCAGCAAGA
TTATCAAACCCTTATCGCCACCGCTCAGCTTGATGAAACCCTGCCTGAACAACGCCTTTATGTGCAATGGCAAAGGGCGG
AAAAAGTGGCTGTCGGACAGCGTTGGCGAGCGGAATTATCCCTACGTCCATTGTCTAGTCGGCTAAATGAGGGGGGATTT
GATCGGCAAAAATGGTATTTTTCAAAGGGGATTACCGCCTATGCAAGGGTGAAAAGTGCGGTCAAAATTTCGGAAGATTT
TTCTTGGCGGGAAGCAAGGTTACAAACCGCATTTCAGCACACTCAAGCCCTCTCAATGCAAGGGCTATTGCTGGCGTTAG
GATTTGGTGAACGGGCGTGGTTGCAGCCAACTCATTGGCAAATCTACCAAAAAACCAATACCGCTCATCTTATCGCTATT
TCAGGGCTACATATTGGCTTGGCAATGTTGCTTGGCGTTGGCATTGCTCGAGGGATACAATTTTGCTTGCCGACCTATTG
GATCACGCCGATGTTTCCGCTTTTTATTGGGGCAATAATCGCGTTGATTTATGCCTATTTAGCGGGATTTTCTATTCCCA
CCCTGCGGGCGTTGGTAGCATTGGGGCTAGTGTGTTTAGTGCGAGGGTTGCGTTTTTATCACACCCCTTGGCAATATTTT
CAGCGGGTGGTAGCAGTGCTGATTTTCTGCCAGCCGTTAATGGTGCTATCGGTGAGTTTTTGGCTATCAGTAGGGGCGGT
AGCAAGTTTGATTTTATGGTATCAATATGTGCCGTTGGATTTGTTTCAGCCACGAACTGATTTAGTCAGGCAGGATCGCC
CGTTCTCTTTAGGGGCAATAATCGGTAAGCTCATACTACGCTGGTGCGTAGCATTGTTGCATTTGCAACTGGGCTTATTG
TTAGTGTTTACCCCCGTTCAGCTTTACTTTTTTCACGGTTTTTCTTTAGCGGGAATGATCGCGAATGTTTTTGCTGTACC
GTTGTTCAGCTTTTTTCTTGTTCCGCTCGTGCTATTTGCGGTACTCAGTAACGGCACATTTTCTTCTTGGCAAGGAGCAA
ATGAATTGGCAGAAAAGATCACCGTTTTTCTGTCAAATTGGCAACATAAATGGATCGATCTTTCCCAAACGCAATCGCAA
TGGATCGGGCTTGGGCTGTGTGCATTGGGGCTGAGCTATGTTTTTGGCTTATGGCAGGTACAGAAAAATCACTCGCTGAA
TAGGCAAAAATCCATTCCGTTCGTTCAGGATCGCACTTTGGCAAAATGGAAATGGAGGTTAAACCCTGACAAAATCCCCT
CAGTATTATGCTTAAAAAAGCTAGGTGTTGTACTGGTGCTTATTTTTCTCGTCAATGGCGGAAATTTGTTGGTAACCCAT
TTTCGGCAACCCGATTGGCGGCTTGAAACCCTTGATGTGGGGCAGGGGCTTGCCACCTTGATCGTGAAAAATCAGCGTGG
CATTTTATATGATACGGGCGCAGCCTGGCGTGGCGGAAGTATGGCAGAATTAGAAATTTTGCCTTATTTACGGCGGCAGG
GTATTGTGCTGGATTACCTTATTTTAAGCCACGACGACAATGATCACGCAGGCGGGGCTGAAGCGGTGTTGCGGGCTTAT
CCCAATGCGACGCTCATTACGTCATCGGAAAAAATCGAGCGAAAAACGCACCGCACTTCTTGTTTCGCGGGAACGCAATG
GCAGTGGCAAGGGTTGCAGATTTCAGCCCTTTCACCGCAAAAGGTGGTGAAACGAGCGGAAAATAATGATTCGTGCGTGC
TGTTGATCGATGATGGGCGGCATAAAGTGTTGCTCACAGGCGACGCGGAAAGCCAAATTGAACCACAGTTTATTTACAAG
GCAGGGAAAATTGACGTGTTACAGGTCGGACATCACGGCAGCAAAACCTCTACCAGCGAGGCATTGGTGAAAACCTTGCA
ACCTAGCATTGCGTTGATTTCTAGTGGACGGGGAAACCCTTGGCATTTCCCGCATTACGCGGTGTTAGCACGTTTGCAAG
CACAGCAAAGTGCGGTGTTAAATACGGCAGATTTTGGACAAATTCTCCTTTCTTTTTCAGCCAAGAAACCACCGCCTGAA
AATATCAGCATTGACACCGCACGGGGAACGTTTTCCCCTTGGTATCGGGAATTATTGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-495)

Metallo-beta-lactamase superfamily (Lactamase_B)

(572-754)

Domain of unknown function (DUF4131) (DUF4131)

(33-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

53.072

93.407

0.496

Multiple sequence alignment