Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SaO267_RS03110 Genome accession   NZ_CP034102
Coordinates   600098..600667 (+) Length   189 a.a.
NCBI ID   WP_000872875.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O267     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 595098..605667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO267_RS03085 (SaO267_00568) cysE 596278..596958 (+) 681 WP_001547606.1 serine O-acetyltransferase -
  SaO267_RS03090 (SaO267_00569) cysS 596942..598342 (+) 1401 WP_000631972.1 cysteine--tRNA ligase -
  SaO267_RS03095 (SaO267_00570) - 598335..598739 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SaO267_RS03100 (SaO267_00571) rlmB 598747..599493 (+) 747 WP_000390334.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SaO267_RS03105 (SaO267_00572) - 599493..600017 (+) 525 WP_126116968.1 NYN domain-containing protein -
  SaO267_RS03110 (SaO267_00573) sigH 600098..600667 (+) 570 WP_000872875.1 RNA polymerase sigma factor Regulator
  SaO267_RS03115 rpmG 600782..600925 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SaO267_RS03120 (SaO267_00574) secE 600981..601163 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SaO267_RS03125 (SaO267_00575) nusG 601176..601724 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SaO267_RS03130 (SaO267_00576) rplK 601905..602327 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SaO267_RS03135 (SaO267_00577) rplA 602535..603227 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SaO267_RS03145 (SaO267_00578) rplJ 603499..603999 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SaO267_RS03150 (SaO267_00579) rplL 604042..604410 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SaO267_RS03155 (SaO267_00580) - 604585..605193 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=328990 SaO267_RS03110 WP_000872875.1 600098..600667(+) (sigH) [Staphylococcus aureus strain O267]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKII

Nucleotide


Download         Length: 570 bp        

>NTDB_id=328990 SaO267_RS03110 WP_000872875.1 600098..600667(+) (sigH) [Staphylococcus aureus strain O267]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCAGTAAAGTATGATTATTTGAGGAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATAATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment