Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   EHF38_RS19820 Genome accession   NZ_CP034092
Coordinates   660635..660808 (+) Length   57 a.a.
NCBI ID   WP_265937497.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A52     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 655635..665808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF38_RS03215 (EHF38_03215) - 656749..657957 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  EHF38_RS03220 (EHF38_03220) - 658036..660327 (+) 2292 Protein_613 Hpt domain-containing protein -
  EHF38_RS19815 (EHF38_03225) - 660401..660577 (+) 177 Protein_614 IS256 family transposase -
  EHF38_RS19820 chpA 660635..660808 (+) 174 WP_265937497.1 hypothetical protein Regulator
  EHF38_RS03230 (EHF38_03230) - 660805..661269 (+) 465 WP_000678926.1 hypothetical protein -
  EHF38_RS03235 (EHF38_03235) dapE 661305..662441 (-) 1137 WP_001016573.1 succinyl-diaminopimelate desuccinylase -
  EHF38_RS03240 (EHF38_03240) - 662567..662710 (-) 144 WP_001984826.1 entericidin A/B family lipoprotein -
  EHF38_RS03245 (EHF38_03245) - 662809..663717 (-) 909 WP_001017534.1 DUF1853 family protein -
  EHF38_RS03250 (EHF38_03250) - 663822..664190 (+) 369 WP_001259501.1 YbaN family protein -
  EHF38_RS03255 (EHF38_03255) elsL 664341..664844 (+) 504 WP_000077301.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6542.48 Da        Isoelectric Point: 4.9566

>NTDB_id=328909 EHF38_RS19820 WP_265937497.1 660635..660808(+) (chpA) [Acinetobacter baumannii strain A52]
MHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVASDSEVKS

Nucleotide


Download         Length: 174 bp        

>NTDB_id=328909 EHF38_RS19820 WP_265937497.1 660635..660808(+) (chpA) [Acinetobacter baumannii strain A52]
ATGCATCAATACATGCCAATTATTATGATTACATCCAGAACAGGCGAAAAACATCGTGAACGAGCATTCTCGTTAGGTGT
AAGTCAATATATGGGTAAACCTTTCCAGGAAGAAGAGTTACTAGAGAATATCGATGCTTTACTTGTAGCGTCTGACAGTG
AGGTCAAATCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

96.491

100

0.965
  chiS Vibrio cholerae strain A1552

40

96.491

0.386

Multiple sequence alignment