Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EHF38_RS17270 Genome accession   NZ_CP034092
Coordinates   3590112..3591533 (+) Length   473 a.a.
NCBI ID   WP_104159680.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A52     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3585112..3596533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF38_RS17250 (EHF38_17250) thrC 3585366..3586505 (+) 1140 WP_000063593.1 threonine synthase -
  EHF38_RS17255 (EHF38_17255) pbpG 3586614..3587660 (-) 1047 WP_005140205.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  EHF38_RS17260 (EHF38_17260) - 3587873..3588508 (+) 636 WP_000633799.1 response regulator -
  EHF38_RS17265 (EHF38_17265) pilS 3588519..3590087 (+) 1569 WP_001160327.1 ATP-binding protein Regulator
  EHF38_RS17270 (EHF38_17270) pilR 3590112..3591533 (+) 1422 WP_104159680.1 sigma-54 dependent transcriptional regulator Regulator
  EHF38_RS17275 (EHF38_17275) - 3591537..3592721 (-) 1185 WP_000939111.1 S41 family peptidase -
  EHF38_RS17280 (EHF38_17280) gpmI 3592737..3594284 (-) 1548 WP_000128747.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  EHF38_RS17285 (EHF38_17285) lptG 3594410..3595480 (-) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53005.22 Da        Isoelectric Point: 6.7825

>NTDB_id=328903 EHF38_RS17270 WP_104159680.1 3590112..3591533(+) (pilR) [Acinetobacter baumannii strain A52]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDAAENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPSKQLTEAAKTYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFVSATQN
IQTTVAAPQVVKKLPSEGLERYLENIEKDILINALNMTHWNRTLAAKKLGMTFRSLRYPLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=328903 EHF38_RS17270 WP_104159680.1 3590112..3591533(+) (pilR) [Acinetobacter baumannii strain A52]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGATGCGTGTT
TAACCGACTTAAACCTACCCGATGGGAGTGGGTTAGACTTAGTCAAACATGTCTCTCAAAATTATCCCAACACTCCCATT
GCCGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCATGATGCTGCCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATCTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCGATTAATTGCGGTGCTATTCCAACCGAACTGATGGAAAGTGAGTTGTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAGCAAGGTCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGATTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCATGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCATCTAAACAATTAACAGAAGCGGCCAAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGACG
CCACCATAGATATATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTCTAATCCTTTTGTTTCGGCTACTCAAAAC
ATACAAACCACTGTGGCGGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTAATCAATGCCCTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCCTCTGAAAAAATTTGGATTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

97.886

100

0.979
  pilR Pseudomonas aeruginosa PAK

50.98

97.04

0.495

Multiple sequence alignment