Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | EHF38_RS10050 | Genome accession | NZ_CP034092 |
| Coordinates | 2080752..2081132 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836915.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain A52 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2075752..2086132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHF38_RS10020 (EHF38_10020) | tadA | 2075871..2076374 (-) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| EHF38_RS10025 (EHF38_10025) | - | 2076381..2077505 (-) | 1125 | WP_000982062.1 | enoyl-CoA hydratase/isomerase family protein | - |
| EHF38_RS10030 (EHF38_10030) | ung | 2077502..2078215 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| EHF38_RS10035 (EHF38_10035) | - | 2078266..2078862 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| EHF38_RS10040 (EHF38_10040) | gspK | 2079092..2080051 (-) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| EHF38_RS10045 (EHF38_10045) | xcpW | 2080051..2080752 (-) | 702 | WP_000594584.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| EHF38_RS10050 (EHF38_10050) | xcpV | 2080752..2081132 (-) | 381 | WP_000836915.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| EHF38_RS10055 (EHF38_10055) | - | 2081122..2081676 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| EHF38_RS10060 (EHF38_10060) | - | 2081686..2082294 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| EHF38_RS10065 (EHF38_10065) | - | 2082332..2083105 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| EHF38_RS10070 (EHF38_10070) | - | 2083123..2083464 (-) | 342 | WP_001183025.1 | PilZ domain-containing protein | - |
| EHF38_RS10075 (EHF38_10075) | - | 2083476..2084456 (-) | 981 | WP_001075412.1 | DNA polymerase III subunit delta' | - |
| EHF38_RS10080 (EHF38_10080) | kdsB | 2084468..2085229 (-) | 762 | WP_128385772.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=328885 EHF38_RS10050 WP_000836915.1 2080752..2081132(-) (xcpV) [Acinetobacter baumannii strain A52]
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=328885 EHF38_RS10050 WP_000836915.1 2080752..2081132(-) (xcpV) [Acinetobacter baumannii strain A52]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
98.413 |
100 |
0.984 |